RF01807.sto

# STOCKHOLM 1.0
#=GF ID GIR1 
#=GF DE GIR1 branching ribozyme 
#=GF CC New structure 4P8Z_A

AJ938153.1/1498-1693                      UUUU..GGUUGgguugggAAGUAUCAUggcuaAUCA.ccAUG.AUGCAAUCGGGUUGAACACUUAAUUgGGUUAAAACGG.....UGGGGG......ACG.A...UCC.CGUAA....CAU.............-----CCGUCCU.A-------..-.......-------ACGGCGACAGACUGCACGGCCCUGCC.UCUUAGGUGUGU.UCAAUGAACAGUCGUUCC.....-GAAA---GGAAGCAUCCGGUAUcccaagACAAUCAAAU
AM497929.1/1-198                          CUGU..UAUUUaugac..-CGU-----...ugUUGU...---.--GCGAUGGGGUUCAUACCUUUAUC.UGCCAAAACGGgaccuCUGUUG......AGGuA...UAA.CCAAU....AUU.............-----CCGUACUaAGGAUUUC..G.......GUCCGGAACGUCUAGAGACUACACGGCAGACCAaUUUUGUGGUGGUaUGAAUGGAUAGUCCCUAG.....-UUACCAUCUAGGCAUCCCAUAC......AAAAUGGUUA
AM497930.1/1-209                          CUGU..UAUU-.......GAGGGCGUU.....--CU...AGU.GUGCAAUGGGGUUCAUACCUUUAUU.UGCCAAAACGGgaccuCUGUUGagguauAAA.AuucUAA.CGAAU....UGA.............AUAUUCCGUACU.AAGGAUUU..A.......AUCCGGAACGUCUAGAGACUACACGGCA-AACC.AAUUUGGUGGUA.UGAAUGGAUAGUCCCUAG.....UGAACCAUCUAGGCAUCCCAUAC......AAAAUGGUUA
AM497931.1/1-200                          CUGU..UAUUG.......AAGGACGU-...ucUAGA...---.GUGCGAUGGGGUUCAUACCUUUAUC.UGCCAAAACGG.....GACCUC......UGU.U...GAG.GUAUA....UAU..........ugaAUAUUCCGUACU.AAGGAUUU..A.......AUCCGGAACGUCUAGAGACUACACGGCAG-ACCaUUGUUGGUGGUA.UGAAUGGAUAGUCCCUAG.....UGAACCAUCUAGGCAUCCCAUAC......AAAAUGGUUA
AM497932.1/1-207                          CUGU..UAUU-.......GAGGACGUU.....--CU...AGU.GUGCAAUGGGGUUCAUACCUUUAUU.UGCCAAAACGG.....GACCUC......UGU.U...GAG.GUAUA..auUCU....aacgaauuaAUAUUCCGUACC.AAGGAUUU..A.......AUCCGGAGCGUCUAGAGACUACACGGCA-AACC.AAUUUGGUGGUA.UGAAUGGAUAGUCCCUAGu....UGAACCAUCUAGGCAUCCCAUAC......AAAAUGGUUA
AM167886.1/221-427                        CUGU..UAUUA.......AAGGACGUU.....--UU...AGU.GUGCGAUGGGGUUCAUACCUUUAUU.UGCCAAAACGG.....GACCUC......UUU.U...GAG.GUAUA.gauUCU...aacgaauugaAUAUUCCGUACU.AAGGAUUU..A.......AUCCGGAACGUCUAGAGACUACACGGCA-AACC.AUU--GGUGGUG.UGAAUGGAUAGUCCCUAG.....UGAACCAUCUAGGCAUCCCAUAC......AAAAUGGUUA
U80250.1/227-423                          CUGU..UAUU-.......--GAACGGC.....CGUU...GUU.GUGCGAUGGGGUUCAUACCUUAAUC.UGCCAAAACGG.....GACCUC......UGU.U...GAG.GUAUA...aCCA.............AUAUUCCGUACUaAGGAUUUC..G.......AUCCAGAACGUCUAGAGACUACACGGUAG-ACCaAUUUUGGUGGUA.UGAAUGGAUAGUCCCUAG.....-UAACCAUCUAGGCAUCCCAUAC......AAAAUGGUUA
DQ768723.1/878-1093                       CUGU..UAUUG.......GAGGAUAUU.....--GA...AGUcAUGCGAUGGGGUUUAUACUUUUAUU.UGCCAAAACGG.....GACCUC......UGU.U...GAG.GUAUA..gaUCUcgcaagagguugaAUAUUCCGUACU.AAGGAUCUcuG.......AUCCGGAAAGUCUAGAGACUACACGGCAAAGCC.AUAGUGGCUAGUaUAAAUGGAUAGUCCCUAG.....UUAACCAUCUAGGCAUCCCAUAC......AAAAUGGUUU
AM167878.1/227-437                        CUGU..UAAUUgu.....GGGUGUAUU.....---U...AGU.GUGCAAUGGGGUUCAUACCUUAAUU.UGCCAAAACGG.....GACCUC......UGU.U...GAG.GUAUAaaauUCU.gaaaagaauugaAUAUUCCGUACU.AAGG--UA..C.......AUCCGGAACGUCUAGAGACUACACGGCA-AACCaAUUUUGGUGGUA.UGAAUGGAUAGUCCCUAG.....-UAACCAUCUAGGCAUCCCAUAC......AAAAUGGUAA
Y10190.1/227-437                          CUGU..UAAUU.......GUGGGUGUA...uuUAGU...---.GUCGAAUGGGGUUCAUACCUUAAUU.UGCCAAAACGG.....GACCUC......UGU.U...GAG.GUAUAaaauUCU.gaaaagaauugaAUAUUCCGUACU.AAGG--UA..C.......AUCCGGAACGUCUAGAGACUACACGGCA-AACCaAUUUUGGUGGUA.UGAAUGGAUAGUCCCUAG.....-UAACCAUCUAGGCAUCCCAUAC......AAAAUGGUAA
DQ388519.1/880-1088                       CAGC..UGUUUugauac.AUGCUCGACuu.ucUUUUucuCUU.GUGCAAUGGGGUUUAUGAGUUAAUU.AGCCAAAACGG.....GACCUU......AAA.A...AGGuGUAAG....UAA.............-----CCGUACUaAGUUCGUA..A.......GAACGGAAUGUCUAGAGACUACACGGCUG-AGCgAUUUAGCUCUCA.UAAAUGGAUAGUCCUCAG.....UAUACCAUCUGAGCAUCCCAUAC......AAAAUGGUUA
AJ001399.1/226-444                        CUGU..UAUUG.......GAAUUUGAU.....---A...GUU.GUGCGAUGGGGUUCAUACCUUAA-C.UGCCAAAACGG.....GACCCC......UUU.U...GGG.GUAUA..aaUCU.uguaaaaggauuAUAUUCCGUACU.AAGGAUAU..UugauaauAUCCGGAAUGUCUAGAGACUACACGGCA-AGCC.AAUU-GGUGGUA.UGAAUGGAUAGUCCCUAGuuuuuUUUACCAUCUAGGUAUCCCAUAC......AAAAUGGUAA
URS000080DE6F_5793/1-188                  -GGUUGGGUUGG-----GAAGUAUCAUGGCUAAUC-ACCAUG-AUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGG-----UGGGGG------ACG-A---UCC-CGUAA----CAU------------------CCGUCCU-A------------------------ACGGCGACAGACUGCACGGCCCUGCC-UCUUAGGUGUGU-CCAAUGAACAGUCGUUCC------GAAA---GGAAGCAUCCGGUAUCCCAAGACAAUC----
#=GR URS000080DE6F_5793/1-188 4P8Z_A_SS   .((.(((.((((.....(..(((((((((...{{{..))))).))))..((((.{{{.{{{{.....{{{{{{...((((.......(((.........}.}...})).).............................))))((.............................)).....(((((...}}}}}}(((......)))}}}}..}}}....))))).((((.............))))....))))...))))).))).))....
#=GC SS_cons                              :[[[..[[[[[.......,,<<<<<<<.....____...>>>.>>>>,((((((,,AAAAAA,,,,,,.BBBB,,,<<<<.....<<<<<<......___._...>>>.>----....>>-.............----->>>><<_.________.._......._________>>,,,<-<<<<<---bbbb--<<<._____>>>aaaa.aa------>>>>>><<<<.....________>>>>,,,)))))),,......,]]]]]]]]:
#=GC RF                                   Cugu..uauUu.......aaGcacgau.....uuuu...auc.gugCaAuGGGgUUcAUaccUUaAUu.uGCCAAAACGG.....ggccuc......ugu.u...gag.guAua....ccu.............AUAUUCCGUaCU.AaGgauuu..a.......AUcCGGAAcGuCUAGAGACUaCACGGCagAgCC.auUUuGGcggua.UgAAUGGAuAGUCCcuaG.....UuaAcCAUCuagGCAuCCCaUAC......AaAaugguaA
//