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buildBiolarkContainer fails on step 4/10 #37

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cdlangen opened this issue Feb 7, 2017 · 1 comment
Open

buildBiolarkContainer fails on step 4/10 #37

cdlangen opened this issue Feb 7, 2017 · 1 comment

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@cdlangen
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cdlangen commented Feb 7, 2017

I tried to build the biolark container with "gradle buildBiolarkContainer". It failed, likely because http://bio-lark.org/hpo/hpo_cr_web.tar.gz is not accessible. The output is below:

:buildBiolarkContainer
Sending build context to Docker daemon 4.096 kB
Step 1/10 : FROM java:8
 ---> d23bdf5b1b1b
Step 2/10 : MAINTAINER richgjackson@gmail.com
 ---> Using cache
 ---> a3d98185588c
Step 3/10 : WORKDIR /usr/src/
 ---> Using cache
 ---> 4b2a1025e2a9
Step 4/10 : ADD 'http://bio-lark.org/hpo/hpo_cr_web.tar.gz' /usr/src
Get http://bio-lark.org/hpo/hpo_cr_web.tar.gz: dial tcp 118.138.241.86:80: i/o timeout
:buildBiolarkContainer FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':buildBiolarkContainer'.
> Process 'command 'docker'' finished with non-zero exit value 1

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.

BUILD FAILED

Total time: 31.294 secs

@RichJackson
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This container needs to download the bio-lark web service from

http://bio-lark.org/hpo/hpo_cr_web.tar.gz

It looks like that's currently out of action. I'll pop an email to Tudor Groza and find out what the problem is

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