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Terminal closes during RoseTTAFold2NA process #145

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agustin-ormazabal opened this issue Jul 22, 2024 · 0 comments
Open

Terminal closes during RoseTTAFold2NA process #145

agustin-ormazabal opened this issue Jul 22, 2024 · 0 comments

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@agustin-ormazabal
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agustin-ormazabal commented Jul 22, 2024

Dear all,

I've been trying to implement RoseTTAFold2NA locally, starting from the examples here provided. The computer I am using with that aim performs Ubuntu 22.04 with a Ryzen 5 six-core processor x12, 24 GiB memory, a Disk Capability of 6.2 Tb and a GPU NVIDIA GeForce GTX 1660. Considering this, I set up the run_RF2NA.sh file with the following variables:

CPU="12" # number of CPUs to use
MEM="24" # max memory (in GB)

However, during the process, the terminal gets closed. The .stderr file is empty, and the .stdout file contains the following lines:

out_prefix /media/lvm-hdds/RoseTTAFold2NA/example/Prueba/toy
Running HHblits against UniRef30 with E-value cutoff 1e-10

As far as I understand, the process is getting killed during the MSA calculation. However, I have no clues regarding how to avoid this. Do you have any idea about what to do?

Kind regards,
Agustín

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