otegui_submit_54.sub

# Script and arguments
executable              = /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin/otegui_run.sh
arguments               = $(idx) \
                          regulators.txt \
                          otegui_cell_clusters.txt


# Log files
log                     = /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin54/logs/run.$(idx).log
output                  = /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin54/logs/run.$(idx).out
error                   = /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin54/logs/run.$(idx).err



# Input/output files
should_transfer_files   = YES
transfer_input_files    = /mnt/dv/wid/projects5/Roy-singlecell/netinf_algo_comparison/bin/MERLIN/merlin-p_self_checkpoint/merlin,\
                          /mnt/dv/wid/projects5/Roy-singlecell/cell_netinf/scripts/condor/sharedlib.tgz,\
                          /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin54/otegui_subset/dataset$(idx).txt,\
                          /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin/regulators.txt,\
                          /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin/otegui_cell_clusters.txt


transfer_output_files   = run.$(idx).tar.gz
initialdir			    = /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin54/output/raw
when_to_transfer_output = ON_EXIT_OR_EVICT



# Resource requirements
universe                = vanilla
request_cpus            = 1
request_memory          = ifthenelse(MemoryUsage =!= undefined, (MAX({34000, MemoryUsage * 5/4})), 34000)
periodic_release        = ((JobStatus == 5) && ((HoldReasonCode == 34) || (HoldReasonCode == 21)) && (NumJobStarts <= 15))
request_disk            = 1G



# Manage checkpointing
match_list_length       = 5
requirements            = (TARGET.Name =!= LastMatchName1)
+is_resumable           = true

# Other settings
Notification            = never
Rank                    = kflops
+WantGlidein            = false
+WantFlocking           = true
+group                  = "WID"
JobBatchName            = "otegui"


#queue idx from /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin/input/input_test.txt

queue idx from /mnt/dv/wid/projects5/Roy-singlecell/sgm_work/otegui/merlin/input/input.txt