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toDoList.txt
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toDoList.txt
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Single Causal variant tasks
1) Add error checks for files existing
2) Add error checks for files being empty
3) Add parallelisation features
4) make a shell wrapper
5) sensitivity analysis automation - Jie
6) Add in pvalue and test statistic modes - Raquel
7) add in ability to specify sd of response
8) add in handling for categorical response (only handles continuous quantitative responses at the moment)
9) add in check that the two snp data sets are sorted
10) documentation and example data - Raquel
11) Run it on all our data - Jie
12) make copies of test data with pvals and test statistics
Multiple causal variant tasks
Ryan
1) make separate script - needs to call code from coloc master directly
2) test on everything
Stretch goal - Simulate data and test on simulated data
Final Project Tasks
1) Prepare the Presentation
2) Write the Paper