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Process stopping without metadata #2

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agiani99 opened this issue Feb 24, 2023 · 1 comment
Open

Process stopping without metadata #2

agiani99 opened this issue Feb 24, 2023 · 1 comment

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@agiani99
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Hi all.
I am trying to read in czi files, but kept having problems by this error message:

Error in detector_gain[i] <- as.numeric(unlist(channel_information[[1]]$DetectorSettings$Gain)) : 
  replacement has length zero

I wonder whether there might be metadata-extracting-errors which could be overlooked or set through a default value.
Eventually substitute the hard stop with warnings
Otherwise the minimal corruption/absence of metadata value would stop the entire process, especially when it comes in reading in files from external source where there is no way to control czi generation.
Best regards
Andrea

@buddekai
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Hi Andrea,
Sorry that I have missed your issue! Would you please send me an example file? I will try to fix the hard stop as well if similar problems occur in the future.
Thanks!
Kai

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