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Copy pathminimal_example.out.uniprot.txt
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minimal_example.out.uniprot.txt
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#genome_nexus_version: 0-unknown-version-SNAPSHOT
#isoform: uniprot
Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Consequence Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer t_ref_count t_alt_count n_ref_count n_alt_count HGVSc HGVSp HGVSp_Short Transcript_ID RefSeq Protein_position Codons Exon_Number Annotation_Status
PIK3CA 5290 GRCh37 3 178916927 178916939 + protein_altering_variant In_Frame_Del DEL TAGGCAACCGTGA G G ENST00000263967.3:c.314_326delinsG p.Val105_Glu109delinsGly p.V105_E109delinsG ENST00000263967 NM_006218.2 105 gTAGGCAACCGTGAa/gGa 2/21 SUCCESS
EGFR 1956 GRCh37 7 55220240 55220240 + splice_region_variant,synonymous_variant Splice_Region SNP G T T ENST00000275493.2:c.630G>T p.X210_splice ENST00000275493 NM_005228.3 210 ctG/ctT 6/28 SUCCESS
EGFR 1956 GRCh37 7 55242468 55242486 + protein_altering_variant In_Frame_Del DEL ATTAAGAGAAGCAACATCT AGCAA GCAA ENST00000275493.2:c.2238_2256delinsGCAA p.Leu747_Ser752delinsGln p.L747_S752delinsQ ENST00000275493 NM_005228.3 746 gaATTAAGAGAAGCAACATCT/gaGCAA 19/28 SUCCESS