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I am trying to follow the 'Refining a Microkinetic Model' tutorial for CatMAP, but am getting the following error when I try to run the model -
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) File ~\anaconda3\envs\CatMap\lib\site-packages\catmap\model.py:447, in ReactionModel.load_data_file(self, overwrite) 446 try: --> 447 pickled_data = catmap.pickle.load(open(self.data_file, 'r')) 448 except: TypeError: a bytes-like object is required, not 'str' During handling of the above exception, another exception occurred: ValueError Traceback (most recent call last) Cell In[7], line 6 3 from catmap import ReactionModel 5 mkm_file = 'CO_oxidation.mkm' ----> 6 model = ReactionModel(setup_file=mkm_file) 7 model.output_variables += ['production_rate'] 8 model.run() File ~\anaconda3\envs\CatMap\lib\site-packages\catmap\model.py:124, in ReactionModel.__init__(self, **kwargs) 120 if hasattr(self,'setup_file'): #parse in setup file. 121 #Note that the syntax is simply python variable definitions. 122 #This is NOT idiot proof. 123 self.model_name = self.setup_file.rsplit('.',1)[0] --> 124 self.load(self.setup_file) File ~\anaconda3\envs\CatMap\lib\site-packages\catmap\model.py:431, in ReactionModel.load(self, setup_file) 428 self.parse_headers += ['coverage'] 429 self.parse() #Automatically parse in data. --> 431 self.load_data_file() 433 self.set_rxn_options() 435 self.generate_echem_TS() File ~\anaconda3\envs\CatMap\lib\site-packages\catmap\model.py:449, in ReactionModel.load_data_file(self, overwrite) 447 pickled_data = catmap.pickle.load(open(self.data_file, 'r')) 448 except: --> 449 pickled_data = catmap.pickle.load(open(self.data_file, 'rb')) 450 for attr in pickled_data: 451 if not overwrite: File ~\anaconda3\envs\CatMap\lib\site-packages\mpmath\ctx_mp_python.py:134, in _mpf.__setstate__(self, val) --> 134 def __setstate__(self, val): self._mpf_ = from_pickable(val) File ~\anaconda3\envs\CatMap\lib\site-packages\mpmath\libmp\libmpf.py:41, in from_pickable(x) 39 def from_pickable(x): 40 sign, man, exp, bc = x ---> 41 return (sign, MPZ(man, 16), exp, bc) ValueError: invalid literal for int() with base 16: 'b4dc72365d1651c8f1dfc42e0203944f430bfb4d74ec2f55c2da2a8ba0f8b21b7d0ddbb05405a538c0668d76ccff04b4a8fc13b3L'
I'm also attaching the list of packages in conda environment.
catmap.txt
What is the potential issue here?
The text was updated successfully, but these errors were encountered:
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I am trying to follow the 'Refining a Microkinetic Model' tutorial for CatMAP, but am getting the following error when I try to run the model -
I'm also attaching the list of packages in conda environment.
catmap.txt
What is the potential issue here?
The text was updated successfully, but these errors were encountered: