- NPO adjacency issues
- NPO cardinality issues
- NPO hasInstanceInTaxon
- ApiNATOMY models use wbrcm
- ApiNATOMY publication metadata
- NPO connections from composer
- NPO mmset1:11 fix the combinatorial paths explosion currently
(expt 5 4)
- alpha
- NPO synaptic connectivity
- stretch
- ApiNATOMY species variance for whole models where not covered by NPO
- NPO NLP all neurons
rdfs:labelis nowprefix id. The oldrdfs:labelis now underilxtr:origLabelandskos:prefLabel. - NPO NLP use
ilxtr:hasAxonLeadingToSensorySubcellularElementInfor neurons with sensory endings. - NPO partial orders corrected for splen-1, sdcol-f, and sdcol-o
- NPO NLP various other fixes
- ApiNATOMY splen-1 fix ontology term and layer inversion issues
- ApiNATOMY sdcol-f fix ontology term and layer inversion issues
- ApiNATOMY sdcol-o fix layer inversion issue
- Include terms from partial orders in npo.ttl.
- NPO swglnd fix forwardConnectionPhenotype axioms
- NPO add populations from NLP sweat glands
- NPO femrep, kidney, liver, and sensory motor populations updated
- NPO senmot fix incorrect usage of
ilxtr:hasAnatomicalSystemPhenotypetoilxtr:hasCircuitRolePhenotype - NPO
TEMP:MISSING_identifiers have been replaced by InterLexILX:ids. - ApiNATOMY aacar-14 fix incorrect reference to C1 spinal segment to be C7 spinal segment.
- Fix issues with subClassOf and partOf hierarchies in npo.ttl.
- NPO add populations from NLP kidney, liver, sensory motor
Populations for kidney and liver contain temporary identifiers in this RC prefixed by
TEMP:MISSING_. - NPO femrep populations updated
- NPO aacar fixes 14 soma location, add missing labels for 14, 15
- Other updated sparc community termset with corrections for REVA terms
- ApiNATOMY splen fixed layer ordering issue for neruon 1
- ApiNATOMY aacar added new populations updated existing populations
- NPO aacar updated hasInstanceInTaxon axioms, added new and updated existing populations, updated partial orders
- NPO add populations for human and rat female reproductive system
- NPO populations now include alerts with information about e.g. uncertainty or interpretational issues
- Add vagus terms for REVA annotation use cases
- NPO fix partial orders for ApiNATOMY populations that have multiple branches and intrinsic neurons Note that the fix for intrinsic neurons means that partial orders now can and do contain cycles!
- ApiNATOMY wbrcm updated with new regions
- NPO fix partial orders for ApiNATOMY populations that include layers
- NPO add populations from NLP semves and prostate
- NPO add citations for NLP and ApiNATOMY populations
- NPO various bugfixes for NLP populations
- NPO use hasAnatomicalSystemPhenotype, hasCircuitRolePhenotype, and hasClassificationPhenotype instead of hasPhenotype where appropriate
- ApiNATOMY wbrcm updated with new regions
- ApiNATOMY aacar-6 fix missing A in A74 that generated a lyph with no metadata
- ApiNATOMY pancr-2 fix incorrect housing lyph pancreatic vasculature to wbkg pancreatic acinus
- ApiNATOMY splen-2 fix incorrect housing layer for nts and dmv
- NPO first pass at partial orders for ApiNATOMY populations
- NPO add missing axioms so that aacar 7 and 8 are not inferred to be equivalent
- NPO add missing axioms so that sdcol j and l are not inferred to be equivalent
- NPO add missing axioms so that kblad 1 and 2 are not inferred to be equivalent note that the full location phenotype axiomatization including layers is distinct, however we have not added the layers yet
- NPO huang 2017 remove duplicate axioms
- NPO clean up npo.ttl generation process
- parcellation schemes now use atom.ttl as their base import
- ApiNATOMY add SciGraph model provenance endpoint https://scicrunch.org/api/1/sparc-scigraph/dynamic/demos/apinat/graphList.json
- NPO add populations from NLP mmset4
- NPO partial orders for NPO populations
- NPO add forwardConnectionPhenotype axioms (synaptic connectivity) to ApiNATOMY populations
- NPO add hasTargetOrgan annotations for sanity check competency queries to ApiNATOMY populations
- curation-export fix protocols.io api v3 v4
- sparc-community-terms sync from dashboard terms, avoid duplicate ontology class definitions
- SciGraph services new dynamic endpoints
/dynamic/prod/npo/hasTaxon/{id}/dynamic/prod/sparc/phenotypeAnatomy/{id}
- ApiNATOMY wbrcm new layers in certain lyphs and corrected hosting regions
- protcur.ttl now includes values from the sparc simple page note curation workflow
- ApiNATOMY add model wbrcm for real this time
- ApiNATOMY added model pancreas
- ApiNATOMY aacar-6 fixed axon locations
- ApiNATOMY bromo replaced FMA ids with UBERON and ILX ids
- ApiNATOMY models now contain version information in the form of a checksum on their input model (example query).
- ApiNATOMY schema change
inheritedExternal -> inheritedOntologyTermsinheritedExternalstill exists and may appear in some models, however ontology terms now only show up underinheritedOntologyTermsand are no longer included ininheritedExternals. - NPO added ebm sparc-nlp (replaces ebm nerves)
- NPO removed ebm nerves
- NPO aacar added hasInstanceInTaxon axioms
- NPO kblad added hasInstanceInTaxon axioms
- Blazegraph/SciGraph loaded graphs now embed information about build provenance that can be used to identify the version of a graph. See embedded load provenance record for examples.
General data harmonization and identifier alignment.