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bioc.jsonld
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bioc.jsonld
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{
"@graph" : [ {
"@id" : "_:b10",
"@type" : "owl:Class",
"unionOf" : {
"@list" : [ "bioc:Passage", "bioc:Sentence" ]
}
}, {
"@id" : "_:b12",
"@type" : "owl:Class",
"unionOf" : {
"@list" : [ "bioc:Collection", "bioc:Infon" ]
}
}, {
"@id" : "_:b16",
"@type" : "owl:Class",
"unionOf" : {
"@list" : [ "bioc:Passage", "bioc:Document", "bioc:Sentence", "bioc:Annotation", "bioc:Relation" ]
}
}, {
"@id" : "_:b18",
"@type" : "owl:Class",
"unionOf" : {
"@list" : [ "bioc:Passage", "bioc:Document", "bioc:Sentence" ]
}
}, {
"@id" : "_:b2",
"@type" : "owl:Class",
"unionOf" : {
"@list" : [ "bioc:Annotation", "bioc:Sentence", "bioc:Passage" ]
}
}, {
"@id" : "http://purl.org/bioc/",
"@type" : "owl:Ontology",
"abstract" : "The BioC format provides a lightweight offline annotation framework (for JSON or XML-formatted data) with very lightweight semantics but has not, to date, been developed as linked data. In this ontology, we provide a simple serialization of BioC classes and attributes for easy publishing to a semantic-web-compatible framework. This is preliminary work and will require additional mapping to existing Web Annotation standards.",
"description" : "A bridging ontology for easy publishing of annotations developed under the National Library of Medicine's BioC format as linked data.",
"license" : "https://opensource.org/licenses/MIT",
"references" : "Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. 'BioC: a minimalist approach to interoperability for biomedical text processing.' Database (Oxford). 2013 Sep 18;2013:bat064. doi:10.1093/database/bat064. Print 2013. PubMed PMID: 24048470; PubMed Central PMCID:PMC3889917.'",
"title" : "BioC Linked Data",
"preferredNamespacePrefix" : "bioc",
"preferredNamespaceUri" : "http://purl.org/bioc/",
"contributor" : [ "(This does not imply any endorsement from any members of this group and are listed here for the purpose of attribution)", "The BioC group: P. Ciccarese, K. Cohen, M. Krallinger, F. Leitner, L. Hirschman, Z. Lu, Y. Peng, F. Rinaldi, M. Torii, A. Valencia, K. Verspoor, T. Wiegers, C. Wu" ],
"creator" : "G. Burns",
"dateCreated" : "07/22/2017",
"logo" : "http://bioc.sourceforge.net/BioClogo.jpg",
"versionInfo" : "0.1",
"hadPrimarySource" : "http://bioc.sourceforge.org/",
"wasAttributedTo" : "http://orcid.org/0000-0003-1493-865X"
}, {
"@id" : "bioc:Annotation",
"@type" : "owl:Class",
"label" : {
"@language" : "en",
"@value" : "BioCAnnotation"
}
}, {
"@id" : "bioc:Collection",
"@type" : "owl:Class",
"comment" : "Collection of documents.\n\nCollection of documents for a project. They may be an entire corpus or some portion of a corpus. Fields are provided to describe the collection.\n\nDocuments may appear empty if doing document at a time IO.",
"isDefinedBy" : "http://purl.org/bioc/",
"label" : {
"@language" : "en",
"@value" : "BioCCollection"
}
}, {
"@id" : "bioc:Document",
"@type" : "owl:Class",
"comment" : "Each bioc:Document in the bioc:Collection.\n\nAn id, typically from the original corpus, identifies the particular document. It includes bioc:Passages in the document and possibly bioc:Relations over annotations on the document.",
"label" : {
"@language" : "en",
"@value" : "BioCDocument"
}
}, {
"@id" : "bioc:Infon",
"@type" : "owl:Class",
"comment" : "A bioc:Infon elements is a simply a URI-based key/value pair linking the annotation to any semantic web annotation. This is deliberately open-ended URI to provide maximum expressibilty. This is equivalent to the original use of the 'infons' field across multiple classes within the BioC standard.",
"label" : {
"@language" : "en",
"@value" : "BioCInfon"
}
}, {
"@id" : "bioc:Location",
"@type" : "owl:Class",
"comment" : "The connection to the original text can be made through the :offset, :length, and possibly the :text data properties.",
"label" : {
"@language" : "en",
"@value" : "BioCLocation"
}
}, {
"@id" : "bioc:Node",
"@type" : "owl:Class",
"label" : {
"@language" : "en",
"@value" : "BioCNode"
}
}, {
"@id" : "bioc:Passage",
"@type" : "owl:Class",
"comment" : "One passage in a bioc:Document.\n\n This might be the bioc:text in the passage and possibly bioc:Annotations over that text. It could be the bioc:Sentences in the passage. In either case it might include bioc:Relations over annotations on the passage.",
"label" : {
"@language" : "en",
"@value" : "BioCPassage"
}
}, {
"@id" : "bioc:Relation",
"@type" : "owl:Class",
"comment" : "Relationship between multiple bioc:Annotations and possibly other bioc:Relations.",
"label" : {
"@language" : "en",
"@value" : "BioCRelation"
}
}, {
"@id" : "bioc:Sentence",
"@type" : "owl:Class",
"comment" : "A bioc:Document offset to where the sentence begins in the bioc:Passage. This value is the sum of the passage offset and the local offset within the passage.",
"label" : {
"@language" : "en",
"@value" : "BioCSentence"
}
}, {
"@id" : "bioc:annotations",
"@type" : "owl:ObjectProperty",
"domain" : "_:b10",
"label" : {
"@language" : "en",
"@value" : "annotations"
},
"range" : "bioc:Annotation"
}, {
"@id" : "bioc:date",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Collection",
"label" : {
"@language" : "en",
"@value" : "date"
},
"range" : "xsd:dateTime"
}, {
"@id" : "bioc:documents",
"@type" : "owl:ObjectProperty",
"domain" : "bioc:Collection",
"label" : {
"@language" : "en",
"@value" : "documents"
},
"range" : "bioc:Document"
}, {
"@id" : "bioc:id",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Document",
"label" : {
"@language" : "en",
"@value" : "id"
},
"range" : "xsd:string"
}, {
"@id" : "bioc:infons",
"@type" : "owl:ObjectProperty",
"domain" : "_:b16",
"label" : {
"@language" : "en",
"@value" : "infons"
},
"range" : "bioc:Infon"
}, {
"@id" : "bioc:key",
"@type" : "owl:DatatypeProperty",
"domain" : "_:b12",
"label" : {
"@language" : "en",
"@value" : "key"
},
"range" : "xsd:anyURI"
}, {
"@id" : "bioc:length",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Location",
"label" : {
"@language" : "en",
"@value" : "length"
},
"range" : "xsd:integer"
}, {
"@id" : "bioc:locations",
"@type" : "owl:ObjectProperty",
"domain" : "bioc:Annotation",
"label" : {
"@language" : "en",
"@value" : "locations"
},
"range" : "bioc:Location"
}, {
"@id" : "bioc:nodes",
"@type" : "owl:ObjectProperty",
"domain" : "bioc:Relation",
"label" : {
"@language" : "en",
"@value" : "nodes"
},
"range" : "bioc:Node"
}, {
"@id" : "bioc:offset",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Sentence",
"label" : {
"@language" : "en",
"@value" : "offset"
},
"range" : "xsd:integer"
}, {
"@id" : "bioc:passages",
"@type" : "owl:ObjectProperty",
"domain" : "bioc:Document",
"label" : {
"@language" : "en",
"@value" : "passages"
},
"range" : "bioc:Passage"
}, {
"@id" : "bioc:refid",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Node",
"label" : {
"@language" : "en",
"@value" : "refid"
},
"range" : "xsd:string"
}, {
"@id" : "bioc:relations",
"@type" : "owl:ObjectProperty",
"domain" : "_:b18",
"label" : {
"@language" : "en",
"@value" : "relations"
},
"range" : "bioc:Relation"
}, {
"@id" : "bioc:role",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Node",
"label" : {
"@language" : "en",
"@value" : "role"
},
"range" : "xsd:anyURI"
}, {
"@id" : "bioc:sentences",
"@type" : "owl:ObjectProperty",
"domain" : "bioc:Passage",
"label" : {
"@language" : "en",
"@value" : "sentences"
},
"range" : "bioc:Sentence"
}, {
"@id" : "bioc:source",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Collection",
"label" : {
"@language" : "en",
"@value" : "source"
},
"range" : "xsd:anyURI"
}, {
"@id" : "bioc:text",
"@type" : "owl:DatatypeProperty",
"domain" : "_:b2",
"label" : {
"@language" : "en",
"@value" : "text"
},
"range" : "xsd:string"
}, {
"@id" : "bioc:value",
"@type" : "owl:DatatypeProperty",
"domain" : "bioc:Infon",
"label" : {
"@language" : "en",
"@value" : "value"
},
"range" : "xsd:anyURI"
}, {
"@id" : "rdfs:label",
"@type" : "owl:AnnotationProperty"
} ],
"@context" : {
"label" : {
"@id" : "http://www.w3.org/2000/01/rdf-schema#label"
},
"range" : {
"@id" : "http://www.w3.org/2000/01/rdf-schema#range",
"@type" : "@id"
},
"domain" : {
"@id" : "http://www.w3.org/2000/01/rdf-schema#domain",
"@type" : "@id"
},
"rest" : {
"@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#rest",
"@type" : "@id"
},
"first" : {
"@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#first",
"@type" : "@id"
},
"unionOf" : {
"@id" : "http://www.w3.org/2002/07/owl#unionOf",
"@type" : "@id"
},
"comment" : {
"@id" : "http://www.w3.org/2000/01/rdf-schema#comment"
},
"hadPrimarySource" : {
"@id" : "http://www.w3.org/ns/prov#hadPrimarySource"
},
"wasAttributedTo" : {
"@id" : "http://www.w3.org/ns/prov#wasAttributedTo",
"@type" : "@id"
},
"abstract" : {
"@id" : "http://purl.org/dc/terms/abstract"
},
"dateCreated" : {
"@id" : "http://schema.org/dateCreated"
},
"creator" : {
"@id" : "http://schema.org/creator"
},
"logo" : {
"@id" : "http://schema.org/logo",
"@type" : "@id"
},
"license" : {
"@id" : "http://purl.org/dc/terms/license",
"@type" : "@id"
},
"contributor" : {
"@id" : "http://schema.org/contributor"
},
"title" : {
"@id" : "http://purl.org/dc/terms/title"
},
"references" : {
"@id" : "http://purl.org/dc/terms/references"
},
"description" : {
"@id" : "http://purl.org/dc/terms/description"
},
"preferredNamespacePrefix" : {
"@id" : "http://purl.org/vocab/vann/preferredNamespacePrefix"
},
"preferredNamespaceUri" : {
"@id" : "http://purl.org/vocab/vann/preferredNamespaceUri"
},
"versionInfo" : {
"@id" : "http://www.w3.org/2002/07/owl#versionInfo"
},
"isDefinedBy" : {
"@id" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"@type" : "@id"
},
"schema" : "http://schema.org/",
"dc-terms" : "http://purl.org/dc/terms/",
"owl" : "http://www.w3.org/2002/07/owl#",
"rdf" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"bioc" : "http://purl.org/bioc/",
"xsd" : "http://www.w3.org/2001/XMLSchema#",
"rdfs" : "http://www.w3.org/2000/01/rdf-schema#",
"vann" : "http://purl.org/vocab/vann/",
"prov" : "http://www.w3.org/ns/prov#"
}
}