Failed to run because of the version of dependencies

[yuxiangtan]

Dear author:

I tried to build the environment with dependencies in conda and found that there will a conflict of python version 2 and 3.

Now, after many attempts, I was able to build a docker with python version 2 and 3 with the following version of dependencies:
pip3 install --user BioPython bcbio-gff gffutils

prokka 1.13.3
perl-bioperl-1.7.2
bowtie2=2.2
diamond= v0.8.36.98
mmseqs2=13.45111

However, even after downgrade the diamond from 0.9 to 0.8, I am still getting the following error:
Error: Incompatible database version

I am not sure which specific diamond version I should use.

In fact, are there any docker or guild line of dependencies with clear version?

Best,

Yuxiang

[yuxiangtan]

Looks like diamond 0.8 had 38 subversions, which one should I use?

Best,

Yuxiang

[leonarDubois]

Hi,

I just checked the one I have in my environment, it's diamond 2.0.8.
I guess any version above 2 should do it, the 0.8 and 0.9 are quite outdated