pctbinning.ggo

package "pct"
version "Create the 3D sequence (2D + distance) of proton radiographies"

option "verbose"    v "Verbose execution"                                        flag            off
option "config"     - "Config file"                                              string          no
option "input"      i "Input file name containing the proton pairs"              string          yes
option "output"     o "Output file name"                                         string          no
option "elosswepl"  - "Output file name (alias for --output)"                    string          no
option "count"      c "Image of count of proton pairs per pixel"                 string          no
option "scatwepl"   - "Image of scattering WEPL of proton pairs per pixel"       string          no
option "noise"      - "Image of WEPL variance per pixel"                         string          no
option "robust"     r "Use robust estimation of scattering using 19.1 %ile."     flag            off

option "source"     s "Source position"                                          double          no  default="0."
option "quadricIn"  - "Parameters of the entrance quadric support function, see http://education.siggraph.org/static/HyperGraph/raytrace/rtinter4.htm"      double multiple no
option "quadricOut" - "Parameters of the exit quadric support function, see http://education.siggraph.org/static/HyperGraph/raytrace/rtinter4.htm"          double multiple no
option "mlptype"    - "Type of most likely path (schulte, polynomial, or krah)"         string          no  default="schulte"
option "mlptrackeruncert"    - "Consider tracker uncertainties in MLP [Krah 2018, PMB]"         flag          off
option "mlppolydeg" - "Degree of the polynomial to approximate 1/beta^2p^2"      int             no  default="5"
option "ionpot"     - "Ionization potential used in the reconstruction in eV"    double          no  default="68.9984"
option "fill"       - "Fill holes, i.e. pixels that were not hit by protons"     flag            off
option "trackerresolution"       - "Tracker resolution in mm"     double no
option "trackerspacing"       - "Tracker pair spacing in mm"     double no
option "materialbudget"       - "Material budget x/X0 of tracker"     double no

section "Projections parameters"
option "origin"    - "Origin (default=centered)" double multiple no
option "dimension" - "Dimension"                 int    multiple no default="256"
option "spacing"   - "Spacing"                   double multiple no default="1"
option "direction" - "Direction"                 double multiple no
option "like"      - "Copy information from this image (origin, dimension, spacing, direction)"  string no