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setup.py
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setup.py
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from setuptools import setup, find_packages
with open("README.md", mode="r", encoding="utf-8") as readme_file:
readme = readme_file.read()
setup(
name="SCProcessing",
version="0.0.2",
author="A. Ali Heydari",
author_email="aliheydari@ucdavis.edu",
description="Preprocessing single cell RNA-seq data for machine learning purposes ",
long_description=readme,
long_description_content_type="text/markdown",
license="MIT",
url="https://github.com/dr-aheydari/SCRealVAE",
download_url="https://github.com/SindiLab/SCData-PreProcessing",
packages=find_packages(),
install_requires=[
'scanpy',
'anndata',
'pandas',
'scipy',
'numpy',
'tqdm',
'python-igraph',
#'fa2' only needed for older version of scanpy (< 0.6.1),
'leidenalg'
],
classifiers=[
"Development Status :: 2 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT Software License",
"Programming Language :: Python :: 3.6",
"Topic :: Scientific/Engineering :: Genomics :: Bioinformatics :: Machine Learning"
],
keywords="Single Cell RNA-seq, Data Preprocessing, Sparse Single Cell, Annotated Data"
)