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snpkit.yaml
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snpkit.yaml
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name: snpkit
channels:
- bioconda
- conda-forge
- defaults
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aiohttp=3.8.4=py310h1fa729e_0
- atk-1.0=2.38.0=hd4edc92_1
- backports=1.1=pyhd3eb1b0_0
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.2=py310h5764c6d_1
- boltons=23.0.0=pyhd8ed1ab_0
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.0=h5eee18b_0
- ca-certificates=2023.08.22=h06a4308_0
- cairo=1.16.0=h35add3b_1015
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_3
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.8=h4147370_0
- coincbc=2.10.10=0_metapackage
- conda=23.7.4=py310hff52083_0
- conda-package-handling=2.2.0=pyh38be061_0
- conda-package-streaming=0.9.0=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=40.0.2=py310h34c0648_0
- datrie=0.8.2=py310h5764c6d_6
- docutils=0.19=py310hff52083_1
- expat=2.5.0=hcb278e6_1
- fftw=3.3.10=nompi_hc118613_107
- fmt=10.1.1=h00ab1b0_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.3=py310h5764c6d_0
- gdk-pixbuf=2.42.10=h6b639ba_2
- gettext=0.21.1=h27087fc_0
- ghostscript=9.54.0=h27087fc_2
- giflib=5.2.1=h0b41bf4_3
- google-crc32c=1.5.0=py310h5eee18b_0
- graphite2=1.3.14=h295c915_1
- graphviz=7.1.0=h2e5815a_0
- grpcio=1.54.0=py310heca2aa9_0
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h64030ff_2
- harfbuzz=6.0.0=h3ff4399_1
- icu=72.1=hcb278e6_0
- imagemagick=7.1.1_7=pl5321h6314f3f_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- jbig=2.1=h7f98852_2003
- jsonpatch=1.33=pyhd8ed1ab_0
- jsonpointer=2.4=py310hff52083_3
- jupyter_core=5.3.0=py310hff52083_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.0=cxx17_hcb278e6_1
- libarchive=3.6.2=h3d51595_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.4.0=hca28451_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgd=2.3.3=hfa28ad5_6
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.76.1=ha491796_0
- libgomp=12.2.0=h65d4601_19
- libgrpc=1.54.0=hcf146ea_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libmamba=1.5.1=h744094f_0
- libmambapy=1.5.1=py310h39ff949_0
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libprotobuf=3.21.12=h3eb15da_0
- librsvg=2.54.4=h7abd40a_0
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.25=hfc55251_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=ha587672_6
- libtool=2.4.7=h27087fc_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.3.0=hb47c5f0_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.4=hfdac1af_0
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- mamba=1.5.1=py310h51d5547_0
- markupsafe=2.1.2=py310h1fa729e_0
- multidict=6.0.4=py310h1fa729e_0
- ncurses=6.4=h6a678d5_0
- networkx=3.2=pyhd8ed1ab_1
- numpy=1.24.2=py310h8deb116_0
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.1.4=hd590300_0
- pandas=2.0.0=py310h9b08913_0
- pango=1.50.14=hd33c08f_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=2_h7f98852_perl5
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- protobuf=4.21.12=py310heca2aa9_0
- psutil=5.9.5=py310h1fa729e_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.7.0=py310hff52083_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.6=py310h2372a71_0
- pygraphviz=1.10=py310h2ea6abb_3
- pynacl=1.5.0=py310h5764c6d_2
- pyrsistent=0.19.3=py310h1fa729e_0
- python=3.10.10=he550d4f_0_cpython
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pyyaml=6.0=py310h5764c6d_5
- re2=2023.02.02=hcb278e6_0
- readline=8.2=h8228510_1
- reproc=14.2.4.post0=hd590300_1
- reproc-cpp=14.2.4.post0=h59595ed_1
- ruamel.yaml=0.17.40=py310h2372a71_0
- ruamel.yaml.clib=0.2.7=py310h2372a71_2
- smart_open=6.3.0=pyhd8ed1ab_1
- snakemake-minimal<=6.8.0=pyhdfd78af_0
- tk=8.6.12=h27826a3_0
- toolz=0.12.0=pyhd8ed1ab_0
- tqdm=4.66.1=pyhd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- wrapt=1.15.0=py310h1fa729e_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.10=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h59595ed_3
- yarl=1.8.2=py310h5764c6d_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.21.0=py310h1275a96_1
- zstd=1.5.5=hc292b87_0
- pip:
- aioeasywebdav==2.4.0
- aiosignal==1.3.1
- amply==0.1.5
- appdirs==1.4.4
- async-timeout==4.0.2
- attmap==0.13.2
- attrs==22.2.0
- backports-functools-lru-cache==1.6.4
- boto3==1.26.115
- botocore==1.29.115
- cachetools==5.3.0
- charset-normalizer==2.1.1
- colorama==0.4.6
- configargparse==1.5.3
- connection-pool==0.0.3
- defusedxml==0.7.1
- dropbox==11.36.0
- exceptiongroup==1.1.1
- fastjsonschema==2.16.3
- filechunkio==1.8
- filelock==3.12.0
- ftputil==5.0.4
- gitdb==4.0.10
- gitpython==3.1.31
- google-api-core==2.11.0
- google-api-python-client==2.86.0
- google-auth==2.17.3
- google-auth-httplib2==0.1.0
- google-cloud-core==2.3.2
- google-cloud-storage==2.8.0
- google-resumable-media==2.4.1
- googleapis-common-protos==1.57.1
- httplib2==0.22.0
- idna==3.4
- importlib-metadata==6.5.0
- importlib-resources==5.12.0
- iniconfig==2.0.0
- jinja2==3.1.2
- jmespath==1.0.1
- jsonschema==4.17.3
- logmuse==0.2.6
- markdown-it-py==2.2.0
- mdurl==0.1.0
- nbformat==5.8.0
- oauth2client==4.1.3
- packaging==23.1
- paramiko==3.1.0
- peppy==0.35.5
- pip==23.1
- pkgutil-resolve-name==1.3.10
- platformdirs==3.2.0
- pluggy==1.0.0
- ply==3.11
- prettytable==3.7.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pycparser==2.21
- pygments==2.15.1
- pyopenssl==23.1.1
- pyparsing==3.0.9
- pysftp==0.2.9
- pysocks==1.7.1
- pytest==7.3.1
- python-dateutil==2.8.2
- python-irodsclient==1.1.6
- pytz==2023.3
- pyu2f==0.1.5
- ratelimiter==1.2.0
- requests==2.28.2
- rich==13.3.4
- rsa==4.9
- s3transfer==0.6.0
- django-celery
- setuptools<=58.0.0
- setuptools-scm==7.1.0
- six==1.16.0
- slacker==0.14.0
- smart-open==6.3.0
- smmap==3.0.5
- snakemake==6.15.5
- stone==3.3.1
- stopit==1.1.2
- tabulate==0.8.10
- tomli==2.0.1
- toposort==1.10
- traitlets==5.9.0
- typing-extensions==4.5.0
- tzdata==2023.3
- ubiquerg==0.6.2
- uritemplate==4.1.1
- urllib3==1.26.15
- veracitools==0.1.4
- wcwidth==0.2.6
- wheel==0.40.0
- zipp==3.15.0
prefix: /home/dhatrib/.conda/envs/snpkit