check-standard.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches:
      - main
      - master
    paths:
      - 'DESCRIPTION'
      - 'NAMESPACE'
      - 'R/**'
      - 'tests/testthat/**'
  pull_request:
    branches:
      - main
      - master
    paths:
      - '.Rbuildignore'
      - '.Rinstignore'
      - 'DESCRIPTION'
      - 'NAMESPACE'
      - 'R/**'
      - 'tests/testthat/**'
      - 'vignettes/**'
  workflow_dispatch:

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          #- {os: macos-latest, r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest, r: 'release'}
          #- {os: ubuntu-latest, r: 'oldrel-1'}
          # comment out the 'devel' testing for odd-numbered BioConductor versions, e.g. v3.15
          #   this typically is the case between April-October
          #- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      R_KEEP_PKG_SOURCE: yes
      TZ: 'America/Denver'

    steps:
      - uses: actions/checkout@v3

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          dependencies: '"all"'
          cache: false
          extra-packages: |
            any::rcmdcheck
            any::testthat
            any::knitr
            any::remotes
            any::rmarkdown
          needs: check

      - uses: r-lib/actions/check-r-package@v2
        with:
          args: 'c("--no-manual", "--as-cran", "--no-build-vignettes", "--timings")'
          build_args: 'c("--no-manual", "--no-resave-data")'
          upload-snapshots: false
          upload-results: false
          error-on: '"warning"'
          check-dir: '"check"'