build-and-test.yml

#
# This source file is part of the PAWS application based on the Stanford Spezi Template Application project
#
# SPDX-FileCopyrightText: 2023 Stanford University
#
# SPDX-License-Identifier: MIT
#

name: Build and Test

on:
  pull_request:
  workflow_dispatch:
  workflow_call:

jobs:
  reuse_action:
    name: REUSE Compliance Check
    uses: StanfordBDHG/.github/.github/workflows/reuse.yml@v2
    permissions:
      contents: read
  swiftlint:
    name: SwiftLint
    uses: StanfordBDHG/.github/.github/workflows/swiftlint.yml@v2
    permissions:
      contents: read
  markdownlinkcheck:
    name: Markdown Link Check
    uses: StanfordBDHG/.github/.github/workflows/markdown-link-check.yml@v2
    permissions:
      contents: read
  buildandtest:
    name: Build and Test
    uses: StanfordBDHG/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2
    permissions:
      contents: read
    with:
      artifactname: PAWS.xcresult
      runsonlabels: '["macOS", "self-hosted"]'
      setupfirebaseemulator: true
      customcommand: "npm install --prefix ./functions && firebase emulators:exec --import=./firebase 'fastlane test'"
  uploadcoveragereport:
    name: Upload Coverage Report
    needs: buildandtest
    uses: StanfordBDHG/.github/.github/workflows/create-and-upload-coverage-report.yml@v2
    permissions:
      contents: read
    with:
      coveragereports: PAWS.xcresult
    secrets:
      token: ${{ secrets.CODECOV_TOKEN }}
  buildandtestdatapipelinenotebook:
    name: Build and Test ECG Data pipeline Notebook
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
    - name: Setup NodeJS
      uses: actions/setup-node@v3
    - name: Setup Java
      uses: actions/setup-java@v3
      with:
        distribution: 'microsoft'
        java-version: '17'
    - name: Setup LaTex
      run: |
        sudo apt-get update -y
        sudo apt-get install -y --no-install-recommends pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic || true
        if ! dpkg -l pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic; then
          sudo apt-get update --fix-missing
          sudo apt-get install -y pandoc texlive-xetex texlive-fonts-recommended texlive-plain-generic
        fi
    - name: Cache Firebase Emulators
      uses: actions/cache@v3
      with:
        path: ~/.cache/firebase/emulators
        key: ${{ runner.os }}-${{ runner.arch }}-firebase-emulators-${{ hashFiles('~/.cache/firebase/emulators/**') }}
    - name: Install Firebase CLI Tools
      run: npm install -g firebase-tools
    - name: Install Infrastructure
      run: |
        python -m pip install --upgrade pip
        pip install jupyterlab
    - name: Install ECGDataPipelineTemplate Dependencies
      run: |
        pip install pandas numpy matplotlib firebase-admin requests ipywidgets pytz
    - name: Set Firestore Emulator Environment Variable
      run: |
        echo "FIRESTORE_EMULATOR_HOST=localhost:8080" >> $GITHUB_ENV
        echo "GCLOUD_PROJECT=ecgdatapipelinetemplate" >> $GITHUB_ENV
    - name: Run Firebase Emulator & Execute Notebook
      run: |
        firebase emulators:exec --import=./ECGDataPipelineTemplate/sample_data "jupyter nbconvert --to pdf --execute ./ECGDataPipelineTemplate/ECGDataPipelineTemplate.ipynb"
      env:
        CI: true
    - uses: actions/upload-artifact@v4
      with:
        name: ECGDataPipelineTemplate.pdf
        path: ECGDataPipelineTemplate.pdf