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Bowtie2 Failing? #31

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StevenWingett opened this issue Jul 7, 2020 · 1 comment
Open

Bowtie2 Failing? #31

StevenWingett opened this issue Jul 7, 2020 · 1 comment
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@StevenWingett
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I suspect sometimes that Bowtie2 fails (e.g. exceeds RAM), but this is not caught by HiCUP. HiCUP proceeds and then generates error messages which appear to be a problem with HiCUP (see attached).

Check this and write code for HiCUP to fail elegantly, if necessary.

Screen Shot 2020-07-06 at 10 12 57 AM 4 1
@StevenWingett StevenWingett added the bug Something isn't working label Jul 7, 2020
@StevenWingett
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This was mentioned in:

#57 (comment)

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@StevenWingett