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Using hicup_deduplicator more than once #36

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StevenWingett opened this issue Jul 29, 2020 · 0 comments
Open

Using hicup_deduplicator more than once #36

StevenWingett opened this issue Jul 29, 2020 · 0 comments
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necessary improvement Not a bug, but the code needs improving in some way

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@StevenWingett
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Sometimes it is necessary to use hicup_deduplicator more than once (for example when combining then de-duplicating technical replicates). This leaves identical tags in the SAM/BAM file and this appears not to adhere to this format (i.e. it is rejected when importing into SeqMonk)

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@StevenWingett StevenWingett added the necessary improvement Not a bug, but the code needs improving in some way label Jul 29, 2020
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