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investigate annotations to deprecated GO terms #29

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andrewsu opened this issue Feb 6, 2019 · 1 comment
Open

investigate annotations to deprecated GO terms #29

andrewsu opened this issue Feb 6, 2019 · 1 comment

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@andrewsu
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andrewsu commented Feb 6, 2019

There are currently 80 items that have a BP annotation to single organismal cell-cell adhesion, despite that term being deprecated by GO. I spot checked a few (e.g., https://www.uniprot.org/uniprot/P35222) and those annotations appear to no longer exist. I would have expected the GO bot to delete these annotations then. We should investigate whether this is the intended bot behavior for reasons I'm forgetting, or whether this is a bug / edge case that needs to be dealt with.

(side note -- would be interested to know how many deprecated GO terms are in WD currently... that would give us a sense of the scale of the issue here.)

@andrawaag
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andrawaag commented Feb 6, 2019

686 deprecated GO terms.

153 items with normal rank statements link to these deprecated items

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