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conda_RF2NA_env.yml
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conda_RF2NA_env.yml
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name: RF2NA
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- blast=2.15.0=pl5321h6f7f691_1
- bzip2=1.0.8=h5eee18b_5
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.3.11=h06a4308_0
- cd-hit=4.8.1=h43eeafb_10
- csblast=2.2.3=h4ac6f70_3
- curl=8.5.0=hdbd6064_0
- entrez-direct=21.6=he881be0_0
- gawk=5.1.0=h7b6447c_0
- hhsuite=3.3.0=py310pl5321h068649b_10
- hmmer=3.4=hdbdd923_1
- infernal=1.1.5=pl5321h031d066_0
- krb5=1.20.1=h143b758_1
- ld_impl_linux-64=2.38=h1181459_1
- libcurl=8.5.0=h251f7ec_0
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=h7f8727e_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=13.2.0=h807b86a_5
- libgomp=13.2.0=h807b86a_5
- libidn2=2.3.4=h5eee18b_0
- libnghttp2=1.57.0=h2d74bed_0
- libnsl=2.0.0=h5eee18b_0
- libsqlite=3.45.3=h2797004_0
- libssh2=1.10.0=hdbd6064_2
- libstdcxx-ng=13.2.0=h7e041cc_5
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libzlib=1.2.13=hd590300_5
- llvm-openmp=18.1.3=h4dfa4b3_0
- lz4-c=1.9.4=h6a678d5_0
- mafft=7.525=h031d066_1
- ncbi-vdb=3.1.0=h4ac6f70_2
- ncurses=6.4=h6a678d5_0
- openssl=3.0.13=h7f8727e_0
- pcre=8.45=h295c915_0
- perl=5.32.1=0_h5eee18b_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.38=pl5321hdfd78af_4
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-encode=3.19=pl5321hec16e2b_1
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.236=pl5321hdfd78af_2
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-scalar-list-utils=1.62=pl5321hec16e2b_1
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pip=23.3.1=py310h06a4308_0
- python=3.10.14=h955ad1f_0
- python_abi=3.10=2_cp310
- readline=8.2=h5eee18b_0
- setuptools=68.2.2=py310h06a4308_0
- sqlite=3.41.2=h5eee18b_0
- tk=8.6.12=h1ccaba5_0
- wget=1.21.4=h251f7ec_1
- wheel=0.41.2=py310h06a4308_0
- xz=5.4.6=h5eee18b_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hc292b87_0
- pip:
- aiohttp==3.9.5
- aiosignal==1.3.1
- annotated-types==0.6.0
- appdirs==1.4.4
- async-timeout==4.0.3
- attrs==23.2.0
- certifi==2024.2.2
- charset-normalizer==3.3.2
- click==8.1.7
- dgl==2.1.0+cu121
- dllogger==1.0.0
- docker-pycreds==0.4.0
- e3nn==0.5.1
- filelock==3.13.4
- frozenlist==1.4.1
- fsspec==2024.3.1
- gitdb==4.0.11
- gitpython==3.1.43
- idna==3.7
- jinja2==3.1.3
- joblib==1.4.0
- markupsafe==2.1.5
- mpmath==1.3.0
- multidict==6.0.5
- networkx==3.3
- numpy==1.26.4
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.19.3
- nvidia-nvjitlink-cu12==12.4.127
- nvidia-nvtx-cu12==12.1.105
- opt-einsum==3.3.0
- opt-einsum-fx==0.1.4
- packaging==24.0
- pandas==2.2.2
- pillow==10.3.0
- protobuf==4.25.3
- psutil==5.9.8
- pydantic==2.7.0
- pydantic-core==2.18.1
- pynvml==11.5.0
- pyparsing==3.1.2
- python-dateutil==2.9.0.post0
- pytz==2024.1
- pyyaml==6.0.1
- requests==2.31.0
- scikit-learn==1.4.2
- scipy==1.13.0
- sentry-sdk==1.45.0
- setproctitle==1.3.3
- six==1.16.0
- smmap==5.0.1
- sympy==1.12
- threadpoolctl==3.4.0
- torch==2.2.1
- torch-geometric==2.5.2
- torchaudio==2.2.1
- torchdata==0.7.1
- torchvision==0.17.1
- tqdm==4.66.2
- triton==2.2.0
- typing-extensions==4.11.0
- tzdata==2024.1
- urllib3==2.2.1
- wandb==0.16.6
- yarl==1.9.4