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HT22 Genome, Epigenome, and Functional Genomics Project

HT22

Laboratory of Tychele N. Turner, Ph.D.

April 2, 2023

Project contributors:

  • Tychele N. Turner, Ph.D.
  • Jeffrey K. Ng
  • Hillary Heins
  • Juana Manuel

Project Information

In this project, we assess genomic, epigenomic, and functional genomic characteristics of the HT-22 Mouse Hippocampal Neuronal Cell Line.

Experiments we conducted include:

  • Karyotype
  • Illumina short-read whole-genome sequencing
  • PacBio HiFi long-read whole-genome sequencing
  • Illumina PolyA RNA sequencing
  • PacBio Long-Read RNA Iso-Seq
  • Illumina ATAC-sequencing of HT-22 cell line
  • Illumina Hi-C sequencing of HT-22 cell line

Raw Data

We have deposited our raw sequencing data in SRA under our NCBI BioProject at https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA938057

Track Hub

We built a custom track hub to load in the UCSC Genome Bowser and it is available at https://data.cyverse.org/dav-anon/iplant/home/tycheleturner/Turner_Lab_Track_Hubs/HT22_genome_epigenome_functional_genomics_project/hub.txt