run_papermill_alone.sh

#!/bin/bash
# Execute programmatically the notebooks with Papermill
conda install mamba -y
mamba install -c conda-forge papermill
papermill countGenesAndEvents.ipynb countGenesAndEvents.ipynb
papermill expressionHeatplot.ipynb expressionHeatplot.ipynb
papermill totalDGEByTissue.ipynb totalDGEByTissue.ipynb
papermill alternativeSplicingHeatplot.ipynb alternativeSplicingHeatplot.ipynb
papermill totalAlternativeSplicingByTissue.ipynb totalAlternativeSplicingByTissue.ipynb
papermill XchromosomalEscape.ipynb XchromosomalEscape.ipynb
papermill splicingIndex.ipynb splicingIndex.ipynb
papermill spliceTypeByChromosome.ipynb spliceTypeByChromosome.ipynb
papermill altSplicing_events_per_gene.ipynb altSplicing_events_per_gene.ipynb
papermill tissue_piechart.ipynb tissue_piechart.ipynb
papermill FisherExactTests.ipynb FisherExactTests.ipynb