Should we explictly add "A1.2.3" to the list of anatomical entities?

[gaurav]

In the following code, A1.2.3 Fully Formed Anatomical Structure is listed as a UMLS category in the comments, but is not listed on line 77:

Babel/src/createcompendia/anatomy.py

Lines 66 to 77 in b0d638e

	#UMLS categories:
	#A1.2 Anatomical Structure
	#A1.2.1 Embryonic Structure
	#A1.2.3 Fully Formed Anatomical Structure
	#A1.2.3.1 Body Part, Organ, or Organ Component
	#A1.2.3.2 Tissue
	#A1.2.3.3 Cell
	#A1.2.3.4 Cell Component
	#A2.1.4.1 Body System
	#A2.1.5.1 Body Space or Junction
	#A2.1.5.2 Body Location or Region
	umlsmap = {x: ANATOMICAL_ENTITY for x in ['A1.2', 'A1.2.1', 'A1.2.3.1', 'A1.2.3.2', 'A2.1.4.1', 'A2.1.5.1', 'A2.1.5.2']}

According to TranslatorSRI/NodeNormalization#119 (comment), there are 41 UMLS IDs classified as A1.2.3 that are leftover at the end of processing. Adding them as anatomical entities could remove them from the UMLS generation.

Next steps:

• Get a list of the 41 anatomical entities leftover in UMLS at the end of processing.

[gaurav]

The 41 anatomical entities leftover in UMLS at the end of processing are (with counts):

count	id	url	label	notes
1	UMLS:C1184839	https://uts.nlm.nih.gov/uts/umls/concept/C1184839	Set of anatomical features	Parent concept of Set of recesses, fossae and folds, Set of eye and related structures and Set of hepatic segmentation: lobes, parts, divisions and segments
1	UMLS:C1254346	https://uts.nlm.nih.gov/uts/umls/concept/C1254346	Fully Formed Anatomical Structure
3	UMLS:C0456626	https://uts.nlm.nih.gov/uts/umls/concept/C0456626	Whole body structures	Parent concept of Whole skeleton, Whole breast, Whole liver, Whole forefoot, Whole body
4	UMLS:C1180279	https://uts.nlm.nih.gov/uts/umls/concept/C1180279	Male adult human body
4	UMLS:C1180280	https://uts.nlm.nih.gov/uts/umls/concept/C1180280	Female adult human body
8	UMLS:C0229961	https://uts.nlm.nih.gov/uts/umls/concept/C0229961	Carcass
9	UMLS:C0229960	https://uts.nlm.nih.gov/uts/umls/concept/C0229960	Entire body as a whole
11	UMLS:C1185545	https://uts.nlm.nih.gov/uts/umls/concept/C1185545	Set of parts of human body

I don't think any of these would be useful to have in Babel, so I'm going to close this issue.