Compile error on Linux

[aleixpinardell]

I am able to compile my Tudat branch on Mac OS X, but when I try to compile it on the server (Linux) I get the following error:

[100%] Linking CXX executable /home/aleix/tudatBundle/tudatApplications/bin/applications/tesp
/home/aleix/tudatBundle/tudat/lib/libtudat_aerodynamics.a(nrlmsise00Atmosphere.cpp.o): In function `tudat::aerodynamics::NRLMSISE00Atmosphere::computeProperties(double, double, double, double)':
nrlmsise00Atmosphere.cpp:(.text+0xa94): undefined reference to `gtd7'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::convertJulianDateToEphemerisTime(double)':
spiceInterface.cpp:(.text+0xb): undefined reference to `j2000_c'
spiceInterface.cpp:(.text+0x20): undefined reference to `spd_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::convertEphemerisTimeToJulianDate(double)':
spiceInterface.cpp:(.text+0x3b): undefined reference to `j2000_c'
spiceInterface.cpp:(.text+0x45): undefined reference to `spd_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::convertDateStringToEphemerisTime(std::string const&)':
spiceInterface.cpp:(.text+0x86): undefined reference to `str2et_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getBodyCartesianStateAtEpoch(std::string const&, std::string const&, std::string const&, std::string const&, double)':
spiceInterface.cpp:(.text+0xcb): undefined reference to `spkezr_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getBodyCartesianPositionAtEpoch(std::string const&, std::string const&, std::string const&, std::string const&, double)':
spiceInterface.cpp:(.text+0x1d8): undefined reference to `spkpos_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::computeRotationQuaternionBetweenFrames(std::string const&, std::string const&, double)':
spiceInterface.cpp:(.text+0x256): undefined reference to `pxform_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::computeRotationMatrixDerivativeBetweenFrames(std::string const&, std::string const&, double)':
spiceInterface.cpp:(.text+0x53b): undefined reference to `sxform_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getAngularVelocityVectorOfFrameInOriginalFrame(std::string const&, std::string const&, double)':
spiceInterface.cpp:(.text+0x5d0): undefined reference to `sxform_c'
spiceInterface.cpp:(.text+0x5e5): undefined reference to `xf2rav_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::computeRotationQuaternionAndRotationMatrixDerivativeBetweenFrames(std::string const&, std::string const&, double)':
spiceInterface.cpp:(.text+0x669): undefined reference to `sxform_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getBodyGravitationalParameter(std::string const&)':
spiceInterface.cpp:(.text+0xa0c): undefined reference to `bodvrd_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getAverageRadius(std::string const&)':
spiceInterface.cpp:(.text+0xa4c): undefined reference to `bodvrd_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::convertBodyNameToNaifId(std::string const&)':
spiceInterface.cpp:(.text+0xa92): undefined reference to `bods2c_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::checkBodyPropertyInKernelPool(std::string const&, std::string const&)':
spiceInterface.cpp:(.text+0xab6): undefined reference to `bods2c_c'
spiceInterface.cpp:(.text+0xac2): undefined reference to `bodfnd_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getTotalCountOfKernelsLoaded()':
spiceInterface.cpp:(.text+0xaff): undefined reference to `ktotal_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::getBodyProperties(std::string const&, std::string const&, int)':
spiceInterface.cpp:(.text+0xb59): undefined reference to `bodvrd_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::loadSpiceKernelInTudat(std::string const&)':
spiceInterface.cpp:(.text+0xae4): undefined reference to `furnsh_c'
/home/aleix/tudatBundle/tudat/lib/libtudat_spice_interface.a(spiceInterface.cpp.o): In function `tudat::spice_interface::clearSpiceKernels()':
spiceInterface.cpp:(.text+0xb11): undefined reference to `kclear_c'
collect2: error: ld returned 1 exit status
tudatApplications/tesp/CMakeFiles/tesp.dir/build.make:121: recipe for target '/home/aleix/tudatBundle/tudatApplications/bin/applications/tesp' failed
make[3]: *** [/home/aleix/tudatBundle/tudatApplications/bin/applications/tesp] Error 1
CMakeFiles/Makefile2:8726: recipe for target 'tudatApplications/tesp/CMakeFiles/tesp.dir/all' failed
make[2]: *** [tudatApplications/tesp/CMakeFiles/tesp.dir/all] Error 2
CMakeFiles/Makefile2:8738: recipe for target 'tudatApplications/tesp/CMakeFiles/tesp.dir/rule' failed
make[1]: *** [tudatApplications/tesp/CMakeFiles/tesp.dir/rule] Error 2
Makefile:2526: recipe for target 'tesp' failed
make: *** [tesp] Error 2

The version of gcc is:

eudoxos /home/aleix> gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper
Target: x86_64-suse-linux
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux
Thread model: posix
gcc version 4.8.5 (SUSE Linux) 

[DominicDirkx]

Have you compiled the full bundle (including spice and nrlmsise) on the server or just Tudat?

[magnific0]

The version of GCC is rather old, but it should work. I have suspicion that it might find some spice kernels on the system instead. Can you copy spice related items from your CMakeCache.txt (inside build folder)?

cat CMakeCache.txt | grep -i spice

[aleixpinardell]

CSpice_BINARY_DIR:STATIC=/home/aleix/build-tudatBundle-Desktop-Default/cspice
CSpice_SOURCE_DIR:STATIC=/home/aleix/tudatBundle/cspice
SPICE_BASE_PATH:PATH=/home/aleix/tudatBundle/cspice/include
SPICE_LIBRARIES:FILEPATH=/home/aleix/tudatBundle/cspice/lib/libcspice.a
//build Tudat with CSPICE enabled
USE_CSPICE:BOOL=ON
cspice_LIB_DEPENDS:STATIC=
tudat_spice_interface_LIB_DEPENDS:STATIC=
//Details about finding SPICE
FIND_PACKAGE_MESSAGE_DETAILS_SPICE:INTERNAL=[/home/aleix/tudatBundle/cspice/include/../..][v()]

[DominicDirkx]

Was spice compiled by you on the server, or did you copy the libraries (including .a files) from your system?

[aleixpinardell]

I'm uploading the whole tudatBundle, running CMake and then running make my_app as I would do on my computer. I get this messages before the error:

[  1%] Built target nrlmsise00
[  1%] Built target tudat_basics
[  1%] Built target tudat_numerical_integrators
[  2%] Built target tudat_relativity
[  2%] Built target tudat_propulsion
[  3%] Built target tudat_electro_magnetism
[  3%] Built target tudat_reference_frames
[  3%] Built target tudat_spice_interface
[  3%] Built target tudat_basic_mathematics
[  3%] Built target tudat_geometric_shapes
[  3%] Built target tesp_library
[  3%] Built target tudat_basic_astrodynamics
[  3%] Built target tudat_mission_segments
[  4%] Built target tudat_aerodynamics
[  4%] Built target tudat_ephemerides
[  5%] Built target tudat_input_output
[  7%] Built target tudat_gravitation
[  7%] Built target tudat_propagators
[ 98%] Built target cspice
[100%] Built target tudat_simulation_setup
[100%] Linking CXX executable /home/aleix/tudatBundle/tudatApplications/bin/applications/tesp

so I guess spice and nrlmsise00 are indeed being compiled.

[DominicDirkx]

Not necessarilly, it says it is already built. Please, be specific. What do you mean when you say 'upload the whole bundle'? Refer to my previous question.

[aleixpinardell]

I removed the build directory and tried compiling again. Now it compiles with no errors.