Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Newdiagtest #1216

Merged
merged 5 commits into from
Apr 15, 2015
Merged

Newdiagtest #1216

merged 5 commits into from
Apr 15, 2015

Conversation

painter1
Copy link
Contributor

Add a new file for testing diagnostics.

@painter1
New test - computes a lat-lon contour plot (atmosphere plot set 5) of…
cd85056 
… the 850-millibar level set

of temperature.  A combined plot is computed and checked with a printout but no effect on the
return value.  The actual values for the model data plot, i.e. the NetCDF file output for the
model data, are checked to determine the return value.
@painter1
Stick diagtest02 into CMakeLists.txt. Check data generated for all th…
4205da3 
…ree plots.
@painter1
Hooked into data in the correct directories, and used keyword arguments.
b66d9f1
@doutriaux1
Copy link
Contributor

@painter1 is it still working off of the old "minimal" set of test data? or de we need to pupload new ones?

@painter1
Copy link
Contributor Author

Yes, it's using the same test data. It's "minimal", but sufficient.

@doutriaux1
Copy link
Contributor 

doutriaux1@maryam:[~/build]:[5069]> ctest -R diags_test_01 -VV
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
Test project /Users/doutriaux1/build
Constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph end
test 377
    Start 377: diags_test_01

377: Test command: /lgm/uvcdat/2015-03-20/bin/python "/git/uvcdat/testing/metrics/diagtest01.py" "/Users/doutriaux1/uvcmetrics_test_data"
377: Test timeout computed to be: 1500
377: Test 1: Sample Diagnostic ... 
377: Traceback (most recent call last):
377:   File "/git/uvcdat/testing/metrics/diagtest01.py", line 39, in <module>
377:     datafiles1 = dirtree_datafiles( opts1, pathid='model' )
377: TypeError: __init__() got an unexpected keyword argument 'pathid'
1/1 Test #377: diags_test_01 ....................***Failed    1.24 sec

0% tests passed, 1 tests failed out of 1

Total Test time (real) =   1.25 sec

The following tests FAILED:
    377 - diags_test_01 (Failed)
Errors while running CTest

@doutriaux1
Copy link
Contributor 

doutriaux1@maryam:[~/build]:[5071]> ctest -R diags_test_02 -VV
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
Test project /Users/doutriaux1/build
Constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph end
test 378
    Start 378: diags_test_02

378: Test command: /lgm/uvcdat/2015-03-20/bin/python "/git/uvcdat/testing/metrics/diagtest02.py" "--datadir=/Users/doutriaux1/uvcmetrics_test_data" "--baseline=/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/"
378: Test timeout computed to be: 1500
378: UV-CDAT Diagnostics, command-line version
378: Added set:  {'climos': 'no', 'end': None, 'name': None, 'filter': None, 'start': None, 'path': '/Users/doutriaux1/uvcmetrics_test_data/cam_output', 'type': 'model'}
378: Added set:  {'climos': 'yes', 'end': None, 'name': None, 'filter': "f_startswith('NCEP')", 'start': None, 'path': '/Users/doutriaux1/uvcmetrics_test_data/obs_atmos', 'type': 'obs'}
378: Enabling NetCDF compression on output files
378: filt:  None
378: INFO:  file /Users/doutriaux1/uvcmetrics_test_data/cam_output/c_t_b30.009.cam2.h0.0600-01.nc has an axis bound with no bounds.
378: An attempt will be made to compute bounds, but that is unreliable compared to bounds provided by the data file.
378: INFO:  file /Users/doutriaux1/uvcmetrics_test_data/cam_output/c_t_b30.009.cam2.h0.0600-01.nc has an axis lev with no bounds.
378: An attempt will be made to compute bounds, but that is unreliable compared to bounds provided by the data file.
378: There will be no more bad data warnings from constructing this filetable.
378: filt:  f_startswith('NCEP')
378: WARNING - no files found at /Users/doutriaux1/uvcmetrics_test_data/obs_atmos with filter f_startswith("NCEP")
378: using seasons= ['ANN']
378: plot set 5 - Horizontal Contour Plots of Seasonal Means
378: WARNING: Couldn't find any of the requested variables: ['T']
378: among ['AODVIS', 'CLDHGH_ISCCP', 'CLDHGH_TAU1.3-9.4_MODIS', 'CLDHGH_TAU1.3_MODIS', 'CLDHGH_TAU9.4_MODIS', 'CLDHGH_VISIR', 'CLDLOW_ISCCP', 'CLDLOW_TAU1.3-9.4_MISR', 'CLDLOW_TAU1.3_MISR', 'CLDLOW_TAU9.4_MISR', 'CLDLOW_VISIR', 'CLDMED_ISCCP', 'CLDMED_VISIR', 'CLDTOT_ISCCP', 'CLDTOT_TAU1.3-9.4_ISCCP', 'CLDTOT_TAU1.3-9.4_MISR', 'CLDTOT_TAU1.3-9.4_MODIS', 'CLDTOT_TAU1.3_ISCCP', 'CLDTOT_TAU1.3_MISR', 'CLDTOT_TAU1.3_MODIS', 'CLDTOT_TAU9.4_ISCCP', 'CLDTOT_TAU9.4_MISR', 'CLDTOT_TAU9.4_MODIS', 'CLDTOT_VISIR', 'CLISCCP', 'CLMISR', 'LHFLX', 'PRECT', 'QFLX', 'RESTOM', 'TGCLDLWP', 'TREFHT']
378: total number of (compound) diagnostic plots generated = 0
378: ERROR: In /Users/doutriaux1/build/build/VTK/IO/Image/vtkPNGReader.cxx, line 44
378: vtkPNGReader (0x7f9de8601200): Unable to open file /var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined.png
378: 
378: ERROR: In /Users/doutriaux1/build/build/VTK/Imaging/Core/vtkImageExtractComponents.cxx, line 239
378: vtkImageExtractComponents (0x7f9de8611fc0): Execute: Component 1 is not in input.
378: 
378: Test 2: Diagnostic contour plots ...  Found Baselines:
378: - /Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png
378: ERROR: In /Users/doutriaux1/build/build/VTK/IO/Image/vtkPNGReader.cxx, line 44
378: vtkPNGReader (0x7f9de8601200): Unable to open file /Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png
378: 
378: ERROR: In /Users/doutriaux1/build/build/VTK/Imaging/Core/vtkImageExtractComponents.cxx, line 239
378: vtkImageExtractComponents (0x7f9de8612030): Execute: Component 1 is not in input.
378: 
378: ERROR: In /Users/doutriaux1/build/build/VTK/Imaging/Core/vtkImageDifference.cxx, line 221
378: vtkImageDifference (0x7f9de884b600): Execute: All ScalarTypes must be unsigned char
378: 
378: Comparing '/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined.png' to '/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png'...diff=1000.000000, New best!
378: All baselines failed! Lowest error (1000.000000) exceeds threshold (10.000000).
378: Saving image diff at '/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined_diff.png'.
378: Warning: In /Users/doutriaux1/build/build/VTK/IO/Image/vtkPNGWriter.cxx, line 215
378: vtkPNGWriter (0x7f9de8622970): PNGWriter only supports unsigned char and unsigned short inputs
378: 
378: <DartMeasurement name="ImageError" type="numeric/double">1000.000000</DartMeasurement>
378: <DartMeasurementFile name="TestImage" type="image/png">/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined.png</DartMeasurementFile>
378: <DartMeasurementFile name="DifferenceImage" type="image/png">/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined_diff.png</DartMeasurementFile>
378: <DartMeasurementFile name="ValidImage" type="image/png">/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png</DartMeasurementFile>
378: Graphics file /var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined.png match difference: -1
378: Traceback (most recent call last):
378:   File "/git/uvcdat/testing/metrics/diagtest02.py", line 75, in <module>
378:     close1 = closeness( varname, filename, pathout, baselinepath, rtol, atol )
378:   File "/git/uvcdat/testing/metrics/diagtest02.py", line 32, in closeness
378:     f = cdms2.open( fname )
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/cdms2/dataset.py", line 221, in openDataset
378:     if not os.path.exists(path): return CdmsFile(path,mode)
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/cdms2/dataset.py", line 890, in __init__
378:     raise CDMSError, 'Cannot open file %s (%s)'%(path,err)
378: cdms2.error.CDMSError: Cannot open file /var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/T_ANN_at_850_mbar_(1)_None.nc (No error)
1/1 Test #378: diags_test_02 ....................***Failed    2.39 sec
File "/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined.png" not found.
File "/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmpMOohpz/set5_Global_ANN_T-combined_diff.png" not found.
File "/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png" not found.

0% tests passed, 1 tests failed out of 1

Total Test time (real) =   2.41 sec

The following tests FAILED:
    378 - diags_test_02 (Failed)
Errors while running CTest

@doutriaux1
Copy link
Contributor

@painter1 @aashish24 my uvcmetrics build directory says:

doutriaux1@maryam:[~/build/build/UVCMETRICS]:[master]:[4928]> git status
On branch master
Your branch is up-to-date with 'origin/master'.

nothing to commit, working directory clean

shouldn't we be fetching some other tag?

My uvcmterics_pkg.cmake says:

set (nm UVCMETRICS)
string(TOUPPER ${nm} uc_nm)
set(${uc_nm}_VERSION ${${nm}_TAG})
set(UVCMETRICS_URL ${LLNL_URL})
set(UVCMETRICS_ZIP uvcmetrics-${UVCMETRICS_VERSION}.zip)
#set(UVCMETRICS_SOURCE ${UVCMETRICS_URL}/${UVCMETRICS_ZIP})
set(UVCMETRICS_SOURCE ${GIT_PROTOCOL}github.com/UV-CDAT/uvcmetrics.git )
set(UVCMETRICS_MD5)
set(UVCMETRICS_BRANCH uvcdat-2.2.0)

add_cdat_package(UVCMETRICS "" "" ON)

@doutriaux1
Copy link
Contributor

just to be sure my .git/config says:

[core]
    repositoryformatversion = 0
    filemode = true
    bare = false
    logallrefupdates = true
    ignorecase = true
    precomposeunicode = true
[remote "origin"]
    url = git://github.com/UV-CDAT/uvcmetrics.git
    fetch = +refs/heads/*:refs/remotes/origin/*
[branch "master"]
    remote = origin
    merge = refs/heads/master

@doutriaux1
Copy link
Contributor

now, after installing 2.2.0 I get:

doutriaux1@maryam:[~/build]:[4907]> ctest -R diags_test_02 -VV
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
Test project /Users/doutriaux1/build
Constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph end
test 378
    Start 378: diags_test_02

378: Test command: /lgm/uvcdat/2015-03-20/bin/python "/git/uvcdat/testing/metrics/diagtest02.py" "--datadir=/Users/doutriaux1/uvcmetrics_test_data" "--baseline=/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/"
378: Test timeout computed to be: 1500
378: Traceback (most recent call last):
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/bin/diags", line 40, in <module>
378:     from metrics.fileio.filetable import *
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/metrics/fileio/__init__.py", line 3, in <module>
378:     import filetable
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/metrics/fileio/filetable.py", line 8, in <module>
378:     from metrics.frontend.options import Options
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/metrics/frontend/__init__.py", line 6, in <module>
378:     vcs_tmp_canvas.scriptrun(os.path.join(sys.prefix,"share","uvcmetrics.json"))
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/vcs/Canvas.py", line 5359, in scriptrun
378:     vcs.scriptrun(aFile,*args,**kargs)
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/vcs/utils.py", line 565, in scriptrun
378:     f=open(script)
378: IOError: [Errno 2] No such file or directory: '/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/share/uvcmetrics.json'
378: Test 2: Diagnostic contour plots ... 
378: Traceback (most recent call last):
378:   File "/git/uvcdat/testing/metrics/diagtest02.py", line 59, in <module>
378:     raise DiagError("diags run failed")
378: metrics.common.utilities.DiagError: diags run failed
1/1 Test #378: diags_test_02 ....................***Failed    1.62 sec

0% tests passed, 1 tests failed out of 1

Total Test time (real) =   1.64 sec

The following tests FAILED:
    378 - diags_test_02 (Failed)
Errors while running CTest

@painter1 didn't we already fixed that jsn thing once? Is it not in 2.2.0 tag? @chaosphere2112 you get that one too right?

@doutriaux1
Copy link
Contributor

@painter1 installing from "devel" i get:

doutriaux1@maryam:[~/build]:[4888]> ctest -R diags_test_02 -VV
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
UpdateCTestConfiguration  from :/Users/doutriaux1/build/DartConfiguration.tcl
Parse Config file:/Users/doutriaux1/build/DartConfiguration.tcl
Test project /Users/doutriaux1/build
Constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph end
test 378
    Start 378: diags_test_02

378: Test command: /lgm/uvcdat/2015-03-20/bin/python "/git/uvcdat/testing/metrics/diagtest02.py" "--datadir=/Users/doutriaux1/uvcmetrics_test_data" "--baseline=/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/"
378: Test timeout computed to be: 1500
378: UV-CDAT Diagnostics, command-line version
378: Added set:  {'climos': 'no', 'end': None, 'name': None, 'filter': None, 'start': None, 'path': '/Users/doutriaux1/uvcmetrics_test_data/cam_output', 'type': 'model'}
378: Added set:  {'climos': 'yes', 'end': None, 'name': None, 'filter': "f_startswith('NCEP')", 'start': None, 'path': '/Users/doutriaux1/uvcmetrics_test_data/obs_atmos', 'type': 'obs'}
378: Enabling NetCDF compression on output files
378: filt:  None
378: INFO:  file /Users/doutriaux1/uvcmetrics_test_data/cam_output/c_t_b30.009.cam2.h0.0600-01.nc has an axis bound with no bounds.
378: An attempt will be made to compute bounds, but that is unreliable compared to bounds provided by the data file.
378: INFO:  file /Users/doutriaux1/uvcmetrics_test_data/cam_output/c_t_b30.009.cam2.h0.0600-01.nc has an axis lev with no bounds.
378: An attempt will be made to compute bounds, but that is unreliable compared to bounds provided by the data file.
378: There will be no more bad data warnings from constructing this filetable.
378: filt:  f_startswith('NCEP')
378: WARNING - no files found at /Users/doutriaux1/uvcmetrics_test_data/obs_atmos with filter f_startswith("NCEP")
378: using seasons= ['ANN']
378: plot set 5 - Horizontal Contour Plots of Seasonal Means
378: WARNING: Couldn't find any of the requested variables: ['T']
378: among ['AODVIS', 'CLDHGH_ISCCP', 'CLDHGH_TAU1.3-9.4_MODIS', 'CLDHGH_TAU1.3_MODIS', 'CLDHGH_TAU9.4_MODIS', 'CLDHGH_VISIR', 'CLDLOW_ISCCP', 'CLDLOW_TAU1.3-9.4_MISR', 'CLDLOW_TAU1.3_MISR', 'CLDLOW_TAU9.4_MISR', 'CLDLOW_VISIR', 'CLDMED_ISCCP', 'CLDMED_VISIR', 'CLDTOT_ISCCP', 'CLDTOT_TAU1.3-9.4_ISCCP', 'CLDTOT_TAU1.3-9.4_MISR', 'CLDTOT_TAU1.3-9.4_MODIS', 'CLDTOT_TAU1.3_ISCCP', 'CLDTOT_TAU1.3_MISR', 'CLDTOT_TAU1.3_MODIS', 'CLDTOT_TAU9.4_ISCCP', 'CLDTOT_TAU9.4_MISR', 'CLDTOT_TAU9.4_MODIS', 'CLDTOT_VISIR', 'CLISCCP', 'CLMISR', 'LHFLX', 'PRECT', 'QFLX', 'RESTOM', 'TGCLDLWP', 'TREFHT']
378: total number of (compound) diagnostic plots generated = 0
378: ERROR: In /Users/doutriaux1/build/build/VTK/IO/Image/vtkPNGReader.cxx, line 44
378: vtkPNGReader (0x7ff54b120880): Unable to open file /var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined.png
378: 
378: ERROR: In /Users/doutriaux1/build/build/VTK/Imaging/Core/vtkImageExtractComponents.cxx, line 239
378: vtkImageExtractComponents (0x7ff548c00da0): Execute: Component 1 is not in input.
378: 
378: Test 2: Diagnostic contour plots ...  Found Baselines:
378: - /Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png
378: ERROR: In /Users/doutriaux1/build/build/VTK/IO/Image/vtkPNGReader.cxx, line 44
378: vtkPNGReader (0x7ff548c00d40): Unable to open file /Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png
378: 
378: ERROR: In /Users/doutriaux1/build/build/VTK/Imaging/Core/vtkImageExtractComponents.cxx, line 239
378: vtkImageExtractComponents (0x7ff548ca8cb0): Execute: Component 1 is not in input.
378: 
378: ERROR: In /Users/doutriaux1/build/build/VTK/Imaging/Core/vtkImageDifference.cxx, line 221
378: vtkImageDifference (0x7ff54a067e00): Execute: All ScalarTypes must be unsigned char
378: 
378: Comparing '/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined.png' to '/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png'...diff=1000.000000, New best!
378: All baselines failed! Lowest error (1000.000000) exceeds threshold (10.000000).
378: Saving image diff at '/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined_diff.png'.
378: Warning: In /Users/doutriaux1/build/build/VTK/IO/Image/vtkPNGWriter.cxx, line 215
378: vtkPNGWriter (0x7ff548f33f70): PNGWriter only supports unsigned char and unsigned short inputs
378: 
378: <DartMeasurement name="ImageError" type="numeric/double">1000.000000</DartMeasurement>
378: <DartMeasurementFile name="TestImage" type="image/png">/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined.png</DartMeasurementFile>
378: <DartMeasurementFile name="DifferenceImage" type="image/png">/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined_diff.png</DartMeasurementFile>
378: <DartMeasurementFile name="ValidImage" type="image/png">/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png</DartMeasurementFile>
378: Graphics file /var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined.png match difference: -1
378: Traceback (most recent call last):
378:   File "/git/uvcdat/testing/metrics/diagtest02.py", line 75, in <module>
378:     close1 = closeness( varname, filename, pathout, baselinepath, rtol, atol )
378:   File "/git/uvcdat/testing/metrics/diagtest02.py", line 32, in closeness
378:     f = cdms2.open( fname )
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/cdms2/dataset.py", line 221, in openDataset
378:     if not os.path.exists(path): return CdmsFile(path,mode)
378:   File "/lgm/uvcdat/2015-03-20/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/cdms2/dataset.py", line 890, in __init__
378:     raise CDMSError, 'Cannot open file %s (%s)'%(path,err)
378: cdms2.error.CDMSError: Cannot open file /var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/T_ANN_at_850_mbar_(1)_None.nc (No error)
1/1 Test #378: diags_test_02 ....................***Failed    2.46 sec
File "/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined.png" not found.
File "/var/folders/nv/3xl0t1xx4yxb6tyd0yqdm238001cpd/T/tmp1_LEho/set5_Global_ANN_T-combined_diff.png" not found.
File "/Users/doutriaux1/build/uvcdat-testdata/baselines/metrics/metrics/set5_Global_ANN_T-combined.png" not found.

0% tests passed, 1 tests failed out of 1

Total Test time (real) =   2.47 sec

The following tests FAILED:
    378 - diags_test_02 (Failed)
Errors while running CTest

@painter1
Copy link
Contributor Author

Charles, could you give me a directory listing of /Users/doutriaux1/uvcmetrics_test_data/* ? Thanks.

@doutriaux1
Copy link
Contributor

doutriaux1@maryam:[vcs]:[me]:[6550]> ll ~/uvcmetrics_test_data/

total 0

drwxr-xr-x 74 doutriaux1 45773 2.5K Aug 27 2014 acme_hires_land

drwxr-xr-x 4 doutriaux1 45773 136B Aug 8 2014 acme_lores_atm_climo

drwxr-xr-x 10 doutriaux1 45773 340B Aug 14 2014 acme_lores_cam_climo

drwxr-xr-x 19 doutriaux1 45773 646B Aug 14 2014 acme_lores_clm_climo

drwxr-xr-x 14 doutriaux1 45773 476B Aug 27 2014 acme_lores_land

drwxr-xr-x 26 doutriaux1 45773 884B Aug 27 2014 cam_output

drwxr-xr-x 17 doutriaux1 45773 578B Aug 14 2014 obs

drwxr-xr-x 20 doutriaux1 45773 680B Aug 27 2014 obs_atmos

From: Jeffrey Painter <notifications@github.commailto:notifications@github.com>
Reply-To: UV-CDAT/uvcdat <reply@reply.github.commailto:reply@reply.github.com>
Date: Wednesday, April 15, 2015 at 8:38 AM
To: UV-CDAT/uvcdat <uvcdat@noreply.github.commailto:uvcdat@noreply.github.com>
Cc: "Doutriaux, Charles" <doutriaux1@llnl.govmailto:doutriaux1@llnl.gov>
Subject: Re: [uvcdat] Newdiagtest (#1216)

Charles, could you give me a directory listing of /Users/doutriaux1/uvcmetrics_test_data/* ? Thanks.

—
Reply to this email directly or view it on GitHubhttps://github.com//pull/1216#issuecomment-93453714.

@painter1
Copy link
Contributor Author

What's one level down, especially in obs_atmos?

@doutriaux1
Copy link
Contributor

doutriaux1@maryam:[vcs]:[boxfill_bug_branch_clean_up+1]:[6611]> ll ~/uvcmetrics_test_data/obs_atmos/

total 2304

-rw-r--r-- 1 doutriaux1 45773 22K Aug 27 2014 c_CRU_ANN_climo.nc

-rw-r--r-- 1 doutriaux1 45773 22K Aug 27 2014 c_CRU_DJF_climo.nc

-rw-r--r-- 1 doutriaux1 45773 22K Aug 27 2014 c_CRU_JJA_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_01_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_02_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_03_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_04_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_05_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_06_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_07_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_08_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_09_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_10_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_11_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_12_climo.nc

-rw-r--r-- 1 doutriaux1 45773 71K Aug 27 2014 c_t_NCEP_ANN_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_DJF_climo.nc

-rw-r--r-- 1 doutriaux1 45773 70K Aug 27 2014 c_t_NCEP_JJA_climo.nc

From: Jeffrey Painter <notifications@github.commailto:notifications@github.com>
Reply-To: UV-CDAT/uvcdat <reply@reply.github.commailto:reply@reply.github.com>
Date: Wednesday, April 15, 2015 at 10:18 AM
To: UV-CDAT/uvcdat <uvcdat@noreply.github.commailto:uvcdat@noreply.github.com>
Cc: "Doutriaux, Charles" <doutriaux1@llnl.govmailto:doutriaux1@llnl.gov>
Subject: Re: [uvcdat] Newdiagtest (#1216)

What's one level down, especially in obs_atmos?

—
Reply to this email directly or view it on GitHubhttps://github.com//pull/1216#issuecomment-93491071.

@painter1
Copy link
Contributor Author

The problem is that the desired file, NCEP_ANN_climo.nc, doesn't exist.
How did that prefix "c_t_" (and "c_" for CRU) get in there? If there's a good reason, I will change my test code to look for it. But NCEP_ANN_climo.nc is the usual name for this file. So the test problem will be easier to understand if that's the file name.

@painter1
Copy link
Contributor Author

Charles, what do you have in the obs directory? Maybe the names are different.

@doutriaux1
Copy link
Contributor

doutriaux1@maryam:[uvcdat-testdata]:[boxfill_bug_branch_clean_up]:[6600]> ll ~/uvcmetrics_test_data/obs

total 106424

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_01_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_02_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_03_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_04_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_05_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_06_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_07_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_08_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_09_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_10_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_11_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.4M Aug 14 2014 NCEP_12_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.7M Aug 14 2014 NCEP_ANN_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.7M Aug 14 2014 NCEP_DJF_climo.nc

-rw-r--r-- 1 doutriaux1 45773 3.7M Aug 14 2014 NCEP_JJA_climo.nc

From: Jeffrey Painter <notifications@github.commailto:notifications@github.com>
Reply-To: UV-CDAT/uvcdat <reply@reply.github.commailto:reply@reply.github.com>
Date: Wednesday, April 15, 2015 at 1:16 PM
To: UV-CDAT/uvcdat <uvcdat@noreply.github.commailto:uvcdat@noreply.github.com>
Cc: "Doutriaux, Charles" <doutriaux1@llnl.govmailto:doutriaux1@llnl.gov>
Subject: Re: [uvcdat] Newdiagtest (#1216)

Charles, what do you have in the obs directory? Maybe the names are different.

—
Reply to this email directly or view it on GitHubhttps://github.com//pull/1216#issuecomment-93553537.

@painter1
Copy link
Contributor Author

I've pushed a new version of diagtest02.py which will work even if you stick a prefix before the filenames.

mcenerney1 added a commit that referenced this pull request Apr 15, 2015
@mcenerney1
Merge pull request #1216 from UV-CDAT/newdiagtest
f216634 
Newdiagtest
@mcenerney1 mcenerney1 merged commit f216634 into master Apr 15, 2015
@doutriaux1
Copy link
Contributor

@mcenerney1 did you test this? I hadn't had a chance to test @painter1 latest changes but before that it didn't pass crest for me

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@painter1 @doutriaux1 @mcenerney1