.travis.yml

language: python
python:
  - "2.7"
notifications:
  email: false
# command to install dependencies
before_install:
  - sudo apt-get update -qq
  - sudo apt-get install -y gcc gfortran 
  - wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh
  - chmod +x miniconda.sh
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda config --add channels r
  - conda config --add channels bioconda
  - conda info -a
  - conda install hmmer muscle mafft 
  - conda install -c anaconda pyqt=4 numpy=1.11.3
  - sudo rm -rf /dev/shm
  - sudo ln -s /run/shm /dev/shm
  - pip install --upgrade pip
  - pip install pep8
install: 
  - cat requirements.txt | xargs -n 1 -L 1 pip install
  - python setup.py install
# command to run tests
script: 
  -  find . -path ./scripts -prune -o -name \*.py -exec pep8 --ignore=E402,E501,E265,E731,E712 {} +