Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

zygosity column #234

Open
fionaelisa opened this issue Nov 3, 2023 · 0 comments
Open

zygosity column #234

fionaelisa opened this issue Nov 3, 2023 · 0 comments

Comments

@fionaelisa
Copy link

Hi
Is there a way of getting the zygosity included as an output column at the table_annotate stage with vcf as input, instead of first doing convert2annovar.pl -withzyg argument to get .avinput file, and then using the new .avinput file and table_annovar.pl and -otherinfo argument?
Preferably would be going from VCF to CSV
Thanks!
Fiona
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@fionaelisa