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installing magpy #42
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Hello Can you tell me what error you get when you run conda env create -f envs/install.yaml ?? Cheers |
When I run
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Just to confirm that the magpy_install and test commands ran to completion for me yesterday with no problems This may be a problem with your conda setup.... |
Hi,
MAGpy seems to be the perfect tool for my metagenomic data analysis but I am unable to even install it. The manual says that after installing conda I should do the following:
conda env create -f envs/install.yaml
However, the install.yaml file doesn't contain all the tools needed to run the analysis hence I get the error. My install.yaml file looks like this:
`name: magpy_install
channels:
dependencies:
Another thing that MAGpy/envs folder contains several files
basic2.yaml basic3.yaml bioperl.yaml checkm.yaml diamond.yaml ete3.yaml install.yaml MAGpy-2.7.yaml MAGpy-3.5.yaml pfam_scan.yaml phylophlan.yaml prodigal.yaml setup.yaml sourmash.yaml
Should I install all of them? Is it possible to have them together in one file so I could install everything in one run?
Please let me know if I am missing something. Many thanks!
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