pathways.txt

41bbPathway	TNF-type receptor 4-1BB is bound by TRAF1 to activate the MAP kinase pathway in activated T cells.	IL2	TRAF2	MAP3K1	IFNG	CHUK	NFKBIA	MAPK14	IL4	RELA	JUN	ATF2	MAP4K5	TNFRSF9	TNFSF9	MAP3K5	IKBKB	NFKB1	MAPK8
ace2Pathway	Angiotensin-converting enzyme 2 (ACE2) digests the blood-pressure regulator angiotensin II (AGT) ultimately to the vasodilator AGT1-7.	COL4A3	COL4A1	COL4A5	AGT	COL4A6	AGTR1	COL4A2	REN	COL4A4	ACE2	CMA1	AGTR2
acetaminophenPathway	Acetaminophen selectively inhibits Cox-3, which is localized to the brain, and yields the toxic metabolite NAPQI when processed by CAR in the liver.	CYP3A	PTGS2	CYP1A2	PTGS1	NR1I3	CYP2E1
achPathway	Nicotinic acetylcholine receptors are ligand-gated ion channels that primarily mediate neuromuscular signaling and may inhibit neuronal apoptosis via the AKT pathway.	RAPSN	TERT	MUSK	PTK2	CHRNG	AKT1	PIK3CA	PIK3R1	BAD	PTK2B	YWHAH	SRC	CHRNB1	FOXO3A	TNFSF6
actinYPathway	The Arp 2/3 complex localizes to the Y-junction of polymerizing actin fibers that enable lamellipod extension and consequent cell motility.	ACTR3	ABI-2	WASL	ARPC4	NTRK1	ARPC3	WASF1	RAC1	WASF2	ACTA1	ARPC1A	PIR	ARPC2	ARPC1B	NCKAP1	NCK1	WASF3	ACTR2	PSMA7
agpcrPathway	G-protein coupled receptors (GPCRs) transduce extracellular signals across the plasma membrane; attenuation occurs by signal molecule degradation or receptor-mediated endocytosis.	PRKAR2A	GNGT1	PRKACB	PRKCB1	PRKCA	PRKAR2B	PRKAR1A	PRKACG	PRKAR1B	GPRK2L	ARRB1	GNAS	GNB1
ahspPathway	Alpha-hemoglobin stabilizing protein (AHSP) prevents precitipation of hemoglobin alpha-subunits.	CPO	HMBS	ALAS1	ERAF	HBA2	ALAD	HBA1	GATA1	ALAS2	UROS	UROD	HBB	FECH
aifPathway	BLACK	ADPRT	PDCD8	BCL2L1	CYCS
akap13Pathway	A-kinase anchor protein 13 (AKAP13) localizes protein kinase A holoenzyme and is a nucleotide exchange factor for Rho/Rac.	EDG4	PRKACG	PRKAR2A	PRKACB	PRKAG1	GNA12	PRKAR2B	EDG2	AKAP13	ARHA	EDG7
akap96Pathway	BioCarta	CDC2	DDX5	PRKACG	PRKAR2A	PPP1CA	PRKACB	CNAP1	CCNB1	PPP2CA	PRKAG1	AKAP8	PRKAR2B
akapCentrosomePathway	Anchoring protein AKAP350 keeps protein kinase A bound to the centrosome during interphase.	PRKAR2A	AKAP9	PRKACB	PRKAR2B	PCNT2	PRKCL1	MAP2	PCNT1	CDC2	PRKACG	PPP1CA	PPP2CA	PRKCE	PRKAG1	ARHA
aktPathway	Second messenger PIP3 promotes cell survival by activating the anti-apoptotic kinase AKT.	FOXO1A	CASP9	PDPK1	GHR	CHUK	NFKBIA	GH1	HSPCA	RELA	AKT1	MLLT7	PIK3CA	PIK3R1	BAD	NFKB1	YWHAH	PPP2CA	FOXO3A	TNFSF6
alkPathway	Activin receptor-like kinase 3 (ALK3) is required during gestation for cardiac muscle development.	TGFB2	MADH4	MAP3K7	CHRD	WNT1	RFC1	NKX2-5	BMP2	ATF2	MYL2	MADH6	NPPB	BMP5	TGFBR3	MADH1	CTNNB1	APC	TGFBR1	NPPA	BMP10	NOG	GSK3B	MEF2C	BMPR2	TCF1	AXIN1	TGFB3	ACVR1	TGFBR2	GATA4	FZD1	DVL1	MADH5	BMPR1A	BMP4	TGFB1	BMP7
alternativePathway	The alternative complement pathway is an antibody-independent mechanism of immune activation that results in cell lysis via the membrane attack complex.	C5	C7	C8A	C3	DF	BF	C6	C9	PFC
amiPathway	Endogenous anti-thrombosis pathways are overwhelmed in plaque-narrowed blood vessels, resulting in potentially lethal myocardial infarction.	TRB@	CD3E	PRKAR2A	HLA-DRA	CD3Z	ZAP70	GNGT1	PRKACB	TRA@	LCK	PRKAR2B	CD4	PRKAR1A	PTPRC	CSK	PRKACG	ADCY1	CD3G	PRKAR1B	GNAS	GNB1	CD3D	HLA-DRB1	CREBBP
anthraxPathway	BLACK	MAP2K2	MAP2K1
appPathway	BLACK	PSEN1	ADAM10	APP	BACE
arapPathway	ADP-ribosylation factors (ARFs), members of the Ras superfamily, regulate eukaryotic vesicular trafficking and activate phospholipase D's.	PSCD4	DDEF1	GBF1	KDELR1	ARFGEF2	COPA	BIG1	DDEF2	CENTD2	PSCD3	COP	KDELR3	PSCD2	CLTB	ARF1	PSCD1	ARFGAP1	GPLD1	CLTA	KDELR2	ARFGAP3	CENTD1
arenrf2Pathway	Nrf1 and nrf2 are transcription factors that bind to antioxidant response elements (AREs), promoters of genes involved in oxidative damage control.	MAFG	PRKCB1	MAFK	PRKCA	MAPK14	FXYD2	JUN	MAFF	KEAP1	CREB1	MAPK1	FOS	NFE2L2	MAPK8
arfPathway	Cyclin-dependent kinase inhibitor 2A is a tumor suppressor that induces G1 arrest and can activate the p53 pathway, leading to G2/M arrest.	ABL1	E2F1	POLR1D	TWIST1	RAC1	POLR1C	MDM2	TBX2	PIK3CA	TP53	PIK3R1	POLR1B	CDKN2A	RB1	POLR1A	MYC
argininecPathway	Related catabolic pathways process arginine, histidine, glutamine, and proline through glutamate to alpha-ketoglutamate, which feeds into the citric acid cycle.	GLS	OAT	ALDH4A1	GLUD1	ARG1	PRODH
asbcellPathway	B cells require interaction with helper T cells to produce antigen-specific immunoglobulins as a key element of the human immune response.	IL2	HLA-DRA	TNFSF5	TNFRSF6	CD80	TNFRSF5	IL4	CD4	TNFSF6	HLA-DRB1	IL10	CD28
at1rPathway	Binding of angiotensin II to AT1-R activates Ca2+ signaling and the JNK pathway.	EGFR	SOS1	PRKCB1	RAC1	MAPK3	JUN	ATF2	MEF2D	CALM1	AGTR1	PAK1	SYT1	CALM2	MAP2K1	SHC1	RAF1	CALM3	MEF2B	GNAQ	MAP2K4	AGT	MAP3K1	MEF2C	PTK2	HRAS	PRKCA	GRB2	PTK2B	MAP2K2	MEF2A	MAPK1	SRC	ELK1	MAPK8
atmPathway	The tumor-suppressing protein kinase ATM responds to radiation-induced DNA damage by blocking cell-cycle progression and activating DNA repair.	ATM	ABL1	NFKBIA	NBS1	MRE11A	RELA	JUN	RAD50	TP73	RBBP8	MDM2	GADD45A	TP53	NFKB1	CHEK2	RAD51	CDKN1A	CHEK1	MAPK8	BRCA1
atrbrcaPathway	BRCA1 and 2 block cell cycle progression in response to DNA damage and promote double-stranded break repair; mutations induce breast cancer susceptibility.	ATM	HUS1	FANCE	FANCA	NBS1	TREX1	MRE11A	ATR	RAD50	BRCA2	RAD17	FANCD2	TP53	RAD1	FANCC	CHEK2	FANCF	RAD9A	RAD51	CHEK1	BRCA1	FANCG
badPathway	When phosphorylated, BAD is inhibited by sequestration; when non-phosphorylated, it promotes apoptosis by inactivating pro-survival BCL-XL and BCL-2.	CSF2RB	IGF1R	PRKAR2A	KITLG	PRKACB	KIT	BCL2	PRKAR2B	IL3	AKT1	PRKAR1A	IGF1	ADCY1	PRKACG	PIK3CA	IL3RA	PIK3R1	PRKAR1B	BAD	BAX	YWHAH	BCL2L1
bbcellPathway	Fas ligand expression by T cells induces apoptosis in Fas-expressing, inactive B cells.	HLA-DRA	TNFSF5	TNFRSF6	TNFRSF5	CD4	TNFSF6	HLA-DRB1	CD28
bcl2family_and_reg_network	GEArray	BIK	BCL6	AKT2	BCL2	BCL2A1	IL3	AKT1	BAK1	APBA2BP	GAPD	IGF1	BAD	BCL2L2	BAX	SFN	NCBP2	CASP8	MCL1	BCL2L1	BAG1	ARHA	BID	ACTB	APAF1
bcrPathway	B cell antigen receptors (BCRs) activate tyrosine kinases and transiently increase tyrosine phosphorylation on binding to antigen.	VAV1	SOS1	PRKCB1	MAPK14	PPP3CC	RAC1	JUN	MAPK3	CALM1	NFATC3	PLCG1	SYT1	CALM2	MAP2K1	NFATC2	SHC1	BLNK	PPP3CA	CD79B	RAF1	CALM3	PPP3CB	NFATC1	MAP3K1	HRAS	PRKCA	LYN	GRB2	BTK	CD79A	NFATC4	FOS	SYK	ELK1	MAPK8
betaoxidationPathway	BLACK	ACADL	ACAT1	ACADM	ECHS1	ACADS	HADHA
biopeptidesPathway	Extracellular signaling peptides exert biological effects via G-protein coupled receptors (GPCRs), which activate intracellular GTPases.	CAMK2D	STAT5A	GNGT1	JAK2	SOS1	PRKCB1	MAPK14	MAPK3	F2	CALM1	MYLK	PLCG1	BDK	SYT1	CALM2	MAP2K1	SHC1	STAT3	AGTR2	CALM3	RAF1	GNA11	GNAI1	AGT	CAMK2G	HRAS	PRKCA	CAMK2A	GRB2	STAT1	MAPT	CAMK2B	PTK2B	MAP2K2	MAPK1	GNB1	FYN	MAPK8	CDK5
blymphocytePathway	B cells express the major histocompatibility complex (class II MHC), immunoglobulins, adhesion proteins, and other factors on their cell surface.	HLA-DRA	ICAM1	CD80	TNFRSF5	CR2	ITGAL	ITGB2	HLA-DRB1	PTPRC	CR1	FCGR2B
botulinPathway	BLACK	SNAP25	CHRM1	STX1A	CHRNA1	VAMP2
breast_cancer_estrogen_signalling	GEArray	SPRR1B	PAPPA	NME1	ATF2	F3	TOP2A	CLDN7	CTSD	CTNNB1	MT3	MAP2K7	ITGA6	TFF3	PTGS2	FHL5	MLP	PLAU	IL6R	CCNE1	TP53	ID2	CCNE2	IGFBP2	GATA3	RAC2	CD44	GSN	ITGB4	ERBB2	CCNA1	CCND1	STC2	PPIA	SLC7A5	SCGB1D2	THBS2	CDKN1B	C3	CCNA2	TGFA	GABRP	NFYB	IL6	TNFSF6	KLK5	FOSL1	DLC1	KRT18	KRT19	CTSB	IL6ST	RPL27	FGF1	FLRT1	CYP19A1	NGFR	PPP1R15A	SERPINE1	CLU	IL2RA	SCGB2A2	BCL2	HSPB1	HMGB1	SCGB2A1	MUC1	TNFAIP2	VEGF	TFF1	MKI67	CDKN2A	TNFRSF6	TIE	AZGP1	ESR1	EGFR	ESR2	JUN	RPL13A	S100A2	KLF5	BPAG1	SERPINA3	NGFB	KRTHB6	KIT	SERPINB5	PGR	AR	GAPD	THBS1	CDH1	THBS4	BAD	BCL2L2	GNAS	COL6A1	CDKN1A	BAG1	ACTB	PTEN
ca_nf_at_signalling	GEArray	IL13	CD3Z	EGR3	XPO5	RELA	PTPRC	GRLF1	SLA	CALM1	TRPV6	ITK	NFATC2	MAP2K7	PPP3R1	CALM3	MEF2B	TNF	EP300	NFATC1	TRAF2	GSK3B	IFNG	IL1B	HRAS	CNR1	PIN1	MEF2A	IL10	CREBBP	GATA3	VAV1	JUNB	FCGR3A	NFAT5	CD3G	GSK3A	PAK1	SP3	CALM2	PPIA	MYF5	FKBP1B	IL8	CAMK4	MAPK9	GATA4	TNFSF5	IL6	TNFSF6	FLJ14639	CD3E	OPRD1	FOSL1	ICOS	MAPK14	IL4	MEF2D	NFKBIB	NFATC3	IL8RA	IL2RA	BCL2	NUP214	IFNB1	VEGF	VAV3	CSNK2A1	KPNA5	P2RX7	IFNA1	VAV2	TGFB1	MAPK8	IL2	CABIN1	CSNK2B	CTLA4	SP1	PPP3CC	RPL13A	CSF2	NPPB	KPNB3	NFKB2	CEBPB	PPP3CB	FCER1A	NFKBIE	IL3	CD69	GAPD	CAMK2B	NFATC4	BAD	SFN	FOS	CDKN1A	NCK2	EGR2	ACTB
cacamPathway	Calcium functions as a second messenger activating the calcium/calmodulin-dependent kinases, which phosphorylate targets such as CREB.	CALM3	CAMK2D	CAMKK1	CAMK1	CAMK2G	CAMK2A	CAMKK2	CAMK4	CAMK2B	CALM1	CREB1	SYT1	CALM2	CAMK1G
calcineurinPathway	Increased intracellular calcium activates the phosphatase calcineurin in differentiating keratinocytes.	CALM3	PPP3CB	GNAQ	NFATC1	MARCKS	PRKCB1	SP1	PRKCA	PPP3CC	CALM1	NFATC3	PLCG1	NFATC4	SP3	SYT1	CALM2	NFATC2	CDKN1A	PPP3CA
cardiacegfPathway	Cardiac hypertrophy, a response to high blood pressure, is stimulated by GPCR ligands such as angiotensin II that activate the EGF pathway.	ADAM12	EGFR	AGT	EGF	PRKCB1	HRAS	PRKCA	RELA	JUN	EDNRA	EDNRB	EDN1	PLCG1	NFKB1	FOS	AGTR2	ARHA	MYC
carm1Pathway	The methyltransferase CARM1 interacts with transcription factors such as CBP/p300 and methylates histones H3 and H4.	EP300	PRKAR2A	RXRA	PRKACB	CARM1	PRKAR2B	RARA	NCOA3	PRKAR1A	PRKACG	PRKAR1B	CREB1	CREBBP
carm-erPathway	Methyltransferase CARM1 methylates CBP and co-activates estrogen receptors via Grip1.	ESR1	CARM1	SHARP	HDAC4	REA	HDAC2	HIST2H3C	CCND1	PELP1	HDAC1	PPARBP	BRCA1	HDAC3	EP300	SRA1	MEF2C	GTF2F1	POLR2A	PPARGC1	GTF2A1	NR0B1	GRIP1	HDAC5	TBP	ERCC3	GTF2E1	HDAC6	NCOR2	NRIP1	CREBBP
caspase_activity	BioCarta	CASP4	CASP1	CASP7	CASP3	CASP5	CASP6	CASP10	CASP14
caspasePathway	Caspases are cysteine proteases active in apoptosis; caspase-8 and 9 cleave and activate other caspases, while 3, 6, and 7 cleave cellular targets.	LMNA	CASP9	LMNB2	CASP4	BIRC3	CASP1	ARHGDIB	CASP6	LMNB1	CYCS	PRF1	GZMB	DFFB	CASP7	CASP3	BIRC4	ADPRT	BIRC2	CASP8	CASP2	CASP10	DFFA	APAF1
cblPathway	Activated EGF receptors undergo endocytosis into clathrin-coated vesicles, where they are recycled to the membrane or ubiquitinated by Cbl.	EGFR	CBL	EGF	PRKCB1	GRB2	PDGFRA	SH3KBP1	PRKCA	SH3GLB2	MET	SH3GLB1	SRC	CSF1R
ccr3Pathway	CCR3 is a G-protein coupled receptor that recruits eosinophils to inflammation sites via chemokine ligands.	PIK3C2G	RAF1	NOX1	GNAQ	CCL11	GNGT1	PTK2	PRKCA	HRAS	PRKCB1	PPP1R12B	CCR3	CFL1	MAPK3	ROCK2	PLCB1	MYL2	LIMK1	GNAS	MAPK1	MAP2K1	GNB1	ARHA
ccr5Pathway	CCR5 is a G-protein coupled receptor expressed in macrophages that recognizes chemokine ligands and is targeted by the HIV envelope protein GP120.	CALM3	CXCL12	GNAQ	CCL4	PRKCB1	PRKCA	MAPK14	CXCR4	JUN	CALM1	PLCG1	CCL2	PTK2B	CCR5	SYT1	FOS	CALM2	MAPK8
cd40Pathway	The CD40 receptor is a TNF-type receptor that regulates immunoglobulin expression in B cells and moderates T cell activation via T-cell expression of its ligand.	IKBKAP	MAP3K1	CHUK	NFKBIA	IKBKG	MAP3K14	TRAF3	RELA	IKBKB	TNFSF5	TNFAIP3	NFKB1	TNFRSF5	TRAF6	DUSP1
cdc25Pathway	The protein phosphatase Cdc25 is phosphorylated by Chk1 and activates Cdc2 to stimulate eukaryotic cells into M phase.	ATM	CDC25C	CDC2	WEE1	CDC25A	CDC25B	YWHAH	CHEK1	MYT1
cdc42racPathway	PI3 kinase stimulates cell migration by activating cdc42, which activates ARP2/3, which in turn promotes formation of new actin fibers.	ACTR3	WASL	ARPC4	CDC42	ARPC3	PDGFRA	RAC1	ARPC1A	ARPC2	ARPC1B	PIK3CA	PIK3R1	PAK1	ACTR2	ARHA
cdk5Pathway	Cdk5, a regulatory kinase implicated in neuronal development, represses Mek1, which downregulates the MAP kinase pathway.	RAF1	NGFB	KLK2	HRAS	MAPK3	CDK5R1	DPM2	NGFR	EGR1	MAP2K2	MAPK1	MAP2K1	CDK5
cdmacPathway	Cadmium 2+ promotes cell proliferation in cultured macrophages by entering the cell via calcium channels and activating the MAP kinase pathway.	RAF1	TNF	NFKBIA	PRKCB1	HRAS	PRKCA	RELA	JUN	MAPK3	PLCB1	NFKB1	MAPK1	FOS	MAP2K1	CUZD1	MYC
cell_adhesion	The attachment of a cell, either to another cell or to the extracellular matrix, via cell adhesion molecules.	CCL11	PCDHB15	KIAA0169	CCL2	TROAP	PCDH16	GNE	MMRN	EMR1	PCDHB11	PTPRF	CLDN10	PTPRU	TNR	ITGB3BP	MFGE8	PCDHB12	USH2A	NRCAM	BAIAP1	CNTNAP2	E48	FLJ10539	GP5	ISLR	PSTPIP1	CXCL12	TSC1	SCARB2	IL8	LPXN	CD96	ZYX	PCDHA3	RAB13	CD97	HABP2	PCDHB10	SPOCK	ALCAM	LOXL2	L1CAM	F8	CNTN2	TPBG	CD226	BYSL	ITGA4	CDH16	NCAM1	ITGA5	TGFB1I1	DSCAM	FAT	CD2	CDH15	PSORS1C1	PCDHB4	CX3CR1	PCDHB3	CDH17	IGSF1	PCDHB2	MADCAM1	IL2	ITGA2	ITGA8	NK4	CHST10	CDH11	CD151	PNN	GP1BA	ARHE	SEMA5A	NPHS1	APC	GP1BB	CLECSF6	PCDHB14	GAC1	SPG7	EED	SDC2	CNTN1	CLDN1	PNUTL1	EDG1	ITGA9	UNQ429	DSG1	SCAM-1	CD36	CASPR4	ARVCF	HAS1	CD33	CCR3	DDR2	CCR8	CDH13	ITGB8	OSF-2	C1orf38	ICAP-1A	HNT	FPRL1	KAL1	JUP	FEZ1	MAEA	SERF2	DSC2	MCAM	LGALS4	ITGB7	CHL1	ITGAV	CDH8	NEO1	ITGB3	CX3CL1	AEBP1	RAC1	ITGB4	CXCR3	DSC3	VWF	CDH2	ITGA2B	NEDD9	CASPR3	CNTNAP1	PCDHB6	ITGA11	CSPG2	VTN	TYRO3	FLJ23042	OPCML	CD72	CDON	DGCR6	ENTPD1	RS1	ATP2A2	DDR1	SEMA4D	PTK2B	NINJ1	FLOT2	FN1	CASK	PTPNS1	CDSN	GPR56	ITGB6	SSPN	CDH3	TNC	APBA1	CELSR1	TGFBI	EMILIN1	SELPLG	AOC3	CDH6	BAI1	MFAP4	CIB1	ITGAX	CD58	CHST4	EFNB1	CTNND1	CNTN6	PPFIBP1	LGALS7	CD164	ITGAM	TM4SF9	SELL	NLGN3	CCL4	MLLT4	TSPAN-2	CCL5	CDH4	PAP	CTNND2	TSPAN-1	LU	PLXNC1	CD22	PKP4	CCR1	ITGAL	ITGB2	ITGBL1	GP9	NID2
cell_adhesion_molecule_activity	OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix.	DSG1	MPZ	CD36	FGA	CD33	CPNE1	ZAN	GPA33	CDH13	PCDHB15	BAIAP2	DCTN6	CTNNB1	CD99	OSF-2	FGB	DSC1	PPFIA2	IL1B	PLAU	PCDHB11	MAEA	SPN	SERF2	DSC2	MCAM	PCDH12	CORO1C	CPNE3	CHL1	NEO1	MFGE8	PCDHB12	NRCAM	PPFIA1	E48	VCAM1	DSC3	VWF	CDH2	GP5	PCDHB6	THBS2	OCLN	NINJ2	VTN	TYRO3	OPCML	CEACAM1	DGCR6	ZYX	ENTPD1	PECAM1	PCDHA3	DSG3	ICAM1	NINJ1	PCDHB10	ALCAM	SELP	ICAM2	L1CAM	FLOT2	CNTN2	ICAM3	FN1	CD226	PCDH11X	BYSL	CDSN	NCAM1	LY9	ICAM5	CD6	SELE	DSCAM	CDH3	PCDH1	FAT	TM4SF8	CD2	CDH15	CEECAM1	PSORS1C1	EMILIN1	PCDHB4	EVA1	ICAM4	PCDHB3	CSPG4	IGSF1	DPT	PCDHB2	CIB1	PKP3	NK4	MPRA	CD58	CD151	PNN	PKP1	ARHE	TM4SF6	CD164	PCDHB14	FGG	SELL	SPG7	F11R	FEZ2	PAP	CNTN1	THBS1	THBS4	CDH1	LU	CD22	GP9	UNQ429	CCL3
cell_adhesion_receptor_activity	OBSOLETE. Combining with cell adhesion molecules to initiate a change in cell activity.	MADCAM1	ITGAE	CRTAC1	SELP	MDS028	ITGB3	ITGA2	ITGAX	ITGA8	ITGB4	TNFAIP6	ITGB1	ITGA4	FLJ10539	ITGB8	ITGA2B	ITGA7	ITGA5	ITGB6	ITGAM	ITGA6	ITGA11	ICAP-1A	FLRT3	ITGA10	TNC	CDA08	ITGA3	ITGB5	BBS2	ITGAL	ITGB2	ITGBL1	DKFZP761D0211	DAG1	ITGB7	ITGA9	ITGAV
Cell_Cycle	The progression of biochemical and morphological events that occur during nuclear or cellular replication.	E2F2	CDK6	MADH4	MAD2L1	HDAC4	ESPL1	ORC1L	CCNB2	CCNH	HDAC2	PRO1073	MCM5	E2F3	MCM6	LOC51270	CHEK1	PRKDC	MAD2L2	CDC6	HDAC7A	ABL1	GSK3B	BUB3	ORC5L	CDC25A	CDC25B	CDK2	SMC1L1	ORC6L	MCM4	E2F6	CCNE1	BUB1B	HDAC5	MDM2	TP53	CDKN2A	CDC14A	PKMYT1	CHEK2	ITM1	HDAC6	CCNE2	MCM2	ORC4L	TGFB1	ATM	ORC2L	CDC45L	MCM3	TFDP1	PTTG2	PTTG3	MADH3	E2F5	CCND2	CDC25C	CCNA1	E2F4	GADD45A	WEE1	HDAC1	SKP2	CDC20	HDAC3	MAD1L1	MCM7	CDKN1B	E2F1	HDAC8	BUB1	CCNA2	PCNA	CDC7	CDC2	CDK4	CCNB1	RB1	ORC3L	PLK	CCND3	PTTG1	CDKN1A	YWHAG
cell_cycle_arrest	Any process by which progression through the cell cycle is halted during one of the normal phases (G1, S, G2, M).	EIF4G2	GAS7	CUL5	MAP2K6	CUL4A	CUL2	IFNW1	GADD45A	CDKN2D	PPP1R15A	C10orf7	CPR2	CUL3	GAS1	CDKN3	MYC	CDKN2C	CDKN1B	KHDRBS1	MAPK12	CUL1	RPP14	CDKN1C	PPM1G	PR48	GMNN	MLLT7	SESN1	CDKN2A	AIF1	CDKN1A	PLAGL1	REPRIMO	PCAF	CDKN2B
cell_cycle_checkpoint	A point in the eukaryotic cell cycle where progress through the cycle can be halted until conditions are suitable for the cell to proceed to the next stage.	ATM	HUS1	MAD2L1	TIMP3	RAD17	MSH3	GADD45A	MCM6	RAD9A	CHEK1	RPA1	LCMT2	BRCA1	ABL1	MCM7	RPA2	NBS1	MCM4	MRE11A	RPA3	RAD50	GAPD	TP53	CHEK2	MXD3	RAD51
cell_cycle_checkpointII	GO	TP53	CCNG2	CDKN2A	RB1	NBS1	CDC34	CCNE2	FANCG	ATR	RBBP8
cell_cycle_regulator	OBSOLETE (was not defined before being made obsolete).	MPHOSPH10	CDC45L	CDK6	ZRF1	CDC37	PRKR	BTG2	MPHOSPH1	MCM5	WEE1	101F6	SPIN	BTG1	CDC6	CDKN1B	BCL2	MPHOSPH9	CDK7	MPHOSPH6	CHES1	YWHAQ	CDK5R1	RGC32	SRPK1	CDKN1A	CDK5
cell_death	Activation or halting of cellular processes so that vital functions markedly cease, culminating in cell death.	RRAGA	EIF4G2	OPTN	EMP3	APP	CLUL1	EMP2	PTGER3	IL17	EVI1	EMP1	FOSL2	CLU
cell_growth_and_or_maintenance	The processes pertinent to the integrated function of a cell.	FLJ10305	QSCN6	DACH2	TRPM1	RASD1	EXT1	RHCG	DNAJA3	SMO	ADPRT	HMG20B	GPC3	PPAP2B	LECT1	TACC3	EIF3S6	KIAA0052	GEM	CTGF	EXTL1	PLAU	COL5A2	FGF5	GNA12	IL6R	DACH	MTM1	CLN5	ANGPT2	JAK3	TFF1	DRG2	PRSS11	NF1	GPR74	EXT2	DTNA	MXD4	HPN	IRF5	GATA2	IER3	GAS2	ERBB2	SUI1	DUSP12	EVI1	INSR	LGALS7	OS-9	SKIL	PRDM1	CXCL1	CDR1	DDX1	RANBP9	CCL4	GAS2L1	PCOLCE	LIMD1	GPC6	PPAP2A	JAZ	INHBA	EXTL3	STMN1	SKI	SEMA3C	DDX26	FOS	EDF1
cell_motility	Any process involved in the controlled movement of a cell.	IL13	FLNA	JAK2	ARFIP2	THBS3	CORO1A	KPTN	NTF3	MST1R	PTGS2	FPRL1	ARPC5	IFNG	KAL1	HRAS	GNA13	ANXA1	PAFAH1B2	LSP1	WASL	NEO1	PAK4	TXN	CAPZA1	PALM	IL8RB	F2R	CRK	RAC1	FPRL2	LIMK1	TNFRSF12A	SERPINI2	CXCR3	CXCL10	PAFAH1B1	MAP2K1	ACTR3	MARCKS	FLJ23042	IL8	CRKL	PECAM1	AAMP	MSN	LTB4R	VNN2	CD97	ADRA2A	SPOCK	HMMR	MAPK14	HGF	TPBG	FN1	KIAA1522	DNALI1	VNN1	OR1D2	PYY	UBE3A	ACTR2	SEMA3E	FLJ10211	CTGF	ACTN4	TM4SF8	NTN1	AKAP3	WASF1	CEECAM1	SPINT2	MMP12	IGF1	ARPC1B	BCL9L	AMFR	CSPG4	BLR1	FPR1	MAPK8	C3AR1	AKAP4	ARPC4	CHST4	KATNB1	NPY	NOS3	CAPZA2	HGFAC	TM4SF6	DNAH5	MKLN1	STAT3	TM4SF9	SELL	ENPP2	SERPINB5	F11R	DNAH8	CCL4	ARPC3	YARS	TSPAN-2	CCL5	ARPC2	THBS1	THBS4	VASP	TSPAN-1	XLKD1	CSPG3	ITGAL	MIR	HUMAUANTIG	DNAH9	CCL3	ACTB
cell_proliferation	The multiplication or reproduction of cells, resulting in the rapid expansion of a cell population.	CKS1B	CDK6	CBFA2T2	TCF8	C6orf108	CTNNBIP1	ISG20	REGL	PDAP2	CDK9	PIM2	VTI1B	GPC4	CHRM1	BUB3	MNT	CTF1	CRIP1	DD5	ADRA1B	RPS4X	PDAP1	ZNF187	ERF	CDC27	EVI5	TACSTD2	CHRM4	DTYMK	ERG	SYK	CYR61	TXN	OSMR	MS4A1	EMP3	CHRM5	USP8	INSL4	IL2RG	TCF19	IL9R	PDCD1LG1	SKB1	BTG1	KHDRBS1	RPP14	BST2	BUB1	UHRF1	RPS27	TGFA	SIPA1	ELN	TRIP	EMP1	SPOCK	TGFB2	CKS2	MET	PYY	ELF5	PTCH	FSCN1	ENPEP	RBBP7	PRKCA	IRF2	CDK7	STAT6	ARHGEF1	BUB1B	EPS8	MKI67	KRT16	PRKCM	CDC14A	BS69	EGFR	LRPAP1	TFDP1	IGFBP4	CUL5	TPX2	IL1A	FTH1	LATS1	CDK3	EPHB4	CSF1	CSE1L	KIF2C	SERPINF1	PRL	PDZK1	PRG4	CDC2L2	PCNA	IL3	FES	TNFRSF9	AKR1C3	SFN	CDK4	KNSL7	THPO	UNQ429	CDK5	IL13	C8FW	HDGF	PRDX1	GFI1B	BLZF1	DUSP22	IL5RA	CD81	MT3	CDC16	MYC	ERBB4	MAS1	NAB2	TM4SF1	IL1B	NUDC	TIEG	FGF5	LGI1	APRIN	EDNRA	HDGFRP3	IL6R	LAMA1	CD160	LRP1	FZD3	GRPR	IL8RB	BCAR1	GAB1	TSPY	ERBB2	ZFP36L2	RFP	OSM	AREG	BCAT1	GSPT1	PEMT	RAF1	MAD1L1	MNAT1	MAD	S100A6	CDK5R1	TNFRSF17	APPL	SLC29A2	IL11	GCG	PTHLH	MATK	EHF	IL6	CD28	PRDM4	EPAC	TCFL5	PDGFRA	HGF	IL4	PSPHL	EMP2	ZNF259	SIL	CLK1	TPD52L2	NDP	IL2RA	BIN1	DKC1	CREG	IL12B	REG1B	KITLG	TM4SF8	GRN	TGFBI	NR6A1	TNFSF13B	EPS15	TAL1	MYT2	MTCP1	PLEKHC1	LAMP3	S100B	TNFSF8	IL15	PDGFA	LMO1	CDC25C	TNFSF9	NPY	MAPRE1	LY86	MIA	SKP2	UBE2V2	CXCL1	TM4SF9	TNFSF7	MPL	INSIG1	E2F1	CCKBR	MAPRE2	IL15RA	IL12A	DAB2	TSPAN-2	PAP	CBFA2T3	TSPAN-1	CXorf15	E4F1	PLK	CSF1R	DCTN2	FGF6	PTEN
cell_surface_receptor_linked_signal_transduction	Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell.	FLNA	DOK1	STC1	PIP5K2B	ASGR2	AGER	DRD4	C21orf4	LILRB2	OXTR	TRPV1	DOK2	PTPRC	RAMP2	8D6A	CCL2	BIRC2	CCL25	KLRF1	GALR2	TNFRSF10B	IL17C	GEM	BIRC3	CSF3	WSX1	IFNG	CTF1	HRAS	KLRD1	RAMP3	MERTK	SAG	MKNK2	BRD8	IL6R	LLT1	FLJ38628	LILRB3	PLCG2	TACSTD2	ANXA1	CCR5	CHRM4	KLRA1	ARHGEF2	TNFRSF14	CD160	GLRA2	KLRG1	OSMR	IL8RB	ADCYAP1R1	BAIAP1	INS	CXCL10	IFNAR2	IL7R	MARCO	NTSR2	STC2	MYD88	INHA	CLC	PDCD1LG1	ADRB2	RRAGA	LILRB1	AGT	LY6E	IL12RB1	IL12RB2	IL18RAP	HRMT1L2	IFNAR1	EDNRB	CLEC2	CD97	LIFR	CENTA1	IL1R1	IL6	CD28	SIRPB1	IFNA2	GIPR	PDGFRA	TACR3	NPR2	MAPK14	ECGF1	HGF	IGSF2	IL6ST	IL8RA	IFNGR2	CLEC1	AGTR2	IL2RA	GLRB	PRKCA	IL13RA1	IFNB1	MADD	TNFRSF13B	CD79A	FLJ32356	BDKRB2	SSTR1	MS4A3	KLRB1	SST	CD19	C5	GLRA1	ADMR	LIF	CD14	CSF2	PDGFA	HCST	ISGF3G	GP1BA	LEPR	P2RY1	CD3D	GP1BB	PRL	CLECSF6	MPL	CD59	CCKBR	TTRAP	IGSF6	FADD	BSG	CD4	LY96	CD69	PNUTL1	CSNK1A1	CCR1	TNFRSF25	IRAK3	BAG1
cell2cellPathway	Epithelial cell adhesion proteins such as cadherins transduce signals into the cell via catenins, which alter cell shape and motility.	ACTN3	PTK2	ACTN2	BCAR1	VCL	PXN	CSK	PECAM1	ACTN1	CTNNA2	SRC	CTNNB1	CTNNA1
cellcyclePathway	Cyclins interact with cyclin-dependent kinases to form active kinase complexes that regulate progression through the cell cycle.	CDKN2C	CDKN1B	E2F1	TFDP1	CDK6	CDC25A	CDK7	CDK2	CCND2	CCNA1	CDC2	CCNE1	CCNH	RBL1	CCND1	CDKN2A	CDKN2D	CDK4	RB1	CCNB1	CCND3	CDKN1A	CDKN2B
ceramidePathway	Ceramide is a lipid signaling molecule that can activate proliferative or apoptotic pathways, depending on signaling context, localization, and cell type.	RAF1	MAP2K4	TRAF2	TRADD	MAP3K1	BCL2	FADD	TNFRSF1A	SMPD1	RELA	MAPK3	CYCS	BAD	BAX	PDCD8	NFKB1	RIPK1	MAPK1	CASP8	NSMAF	MAP2K1	MAPK8
cftrPathway	The cAMP-regulated chloride channel CFTR (deficient in cystic fibrosis) is regulated by the surface-localized beta-adrenergic receptor.	ADRB2	ADCY1	PRKACG	PRKAR2A	CFTR	SLC9A3R1	PRKAR1B	PRKACB	GNAS	VIL2	PRKAR2B	PRKAR1A
chemicalPathway	DNA damage promotes Bid cleavage, which stimulates mitochondrial cytochrome c release and consequent caspase activation, resulting in apoptosis.	EIF2S1	ATM	CASP9	BCL2	PTK2	PRKCB1	PRKCA	PXN	CASP6	AKT1	CYCS	STAT1	TP53	CASP7	BAD	CASP3	ADPRT	BAX	TLN1	BCL2L1	BID	APAF1
chrebpPathway	Carbohydrate responsive element binding protein (chREBP) is a transcription factor inhibited by cAMP and activated by high carbohydrate levels.	PRKAR2A	PRKACB	GNGT1	PRKAR2B	PRKAR1A	BG1	PRKAG2	PRKAA2	BUCS1	ADCY1	PRKACG	PRKAR1B	PRKAB1	WBSCR14	GNAS	PPP2CA	GNB1	PRKAG1	PRKAA1	PRKAB2
circadianPathway	A heterodimer composed of Bmal1 and Clock acts as a transcription factor for proteins that regulate circadian rhythms, such as Per and Cry.	CRY2	PER1	ARNTL	CRY1	CLOCK	CSNK1E
ck1Pathway	Caseine kinase 1 (CK1) and cdk5 phosphorylate DARPP32 in the dopamine signaling pathway.	PPP1R1B	PRKAR2A	GRM1	DRD1	PRKACB	PRKAR2B	PRKAR1A	PLCB1	CDK5R1	PRKACG	PPP1CA	PRKAR1B	PPP2CA	CSNK1D	DRD2	PPP3CA	CDK5
classicPathway	The classic complement pathway is initiated by antibodies and promotes phagocytosis and lysis of foreign cells as well as activating the inflammatory response.	C2	C1QB	C1QG	C5	C8A	C1QA	C3	C4B	C9	C1R	C7	C1S	C4A	C6
Complement_Activation_Classical	Processes involved in the classical complement cascade, which promotes microbial lysis, disposal of immune complexes, and regulation of other immune processes.	C2	C1QB	C1QG	MGC2198	DAF	C5	C8A	C1QA	C3	C8B	C9	C7	MASP1	C1S	C4A	C6
compPathway	Both the classic and alternative immune complement pathways promote inflammation, foreign cell lysis, and phagocytosis.	MBL2	C2	MASP2	C1QB	C1QG	C5	C8A	C1QA	C3	C4B	BF	C9	C1R	C7	DF	MASP1	C4A	C1S	C6
cptPathway	BLACK	CPT1A	CPT2	ACAS2	SLC25A20
CR_ANGIOG	PNAS_2001	ANGPTL2	THBS1	VEGFB	BAI1	FLT1	FLT4	KDR	ENG	PECAM1	VEGF
CR_CAM	PNAS_2002	DSG1	ITGAE	HMMR	ALCAM	SELP	ICAM2	TIMP3	ICAM3	FN1	MMP9	ITGB1	BYSL	GPA33	ITGA4	CDH13	NCAM1	ITGB8	TIMP1	ITGA5	CD99	SELE	CDH3	PCDH1	FAT	PTK2	SDC1	TNC	ARHGAP6	JUP	CDH15	SELPLG	ITGA3	TNS	TIMP2	CDH6	ROCK1	NCAM2	ARHGAP1	ITGB5	MCAM	CDH7	ITGA1	PTPRU	CDH17	ITGB7	ITGAV	WASL	NEO1	ITGB3	ITGA2	CDH18	CDH12	ITGAX	CD44	MMP13	CDH5	F2R	RAC1	CD58	CDH11	ITGB4	SERPINI2	CXCR3	MMP1	VCAM1	DSC3	PKP1	ITGA7	CDH2	ADD3	BPAG1	ITGAM	CXCL12	CD47	SELL	SERPINB5	ANK1	CEACAM1	IL8	MMP11	ZYX	CDH4	PECAM1	GJB2	GJA4	CNTN1	CDH1	SEMA4D	CD97	ICAM1	DCC	PKD1	ITGB2	ITGAL	ITGA9
CR_CANCER_TESTIS	PNAS_2003	BAGE	MAGEA10	SSX2	MAGEA8	MAGEA12	TESK1	CTAG2	MAGEE1	MAGEA9	SSX1	MAGEA3	GAGE1
CR_CELL_CYCLE	PNAS_2004	CDC2L5	E2F2	HUS1	FOSL1	SKP1A	CKS1B	ERH	CENPE	CDK6	CKS2	MAD2L1	ORC1L	BTG2	CCNH	CDK8	MYBL2	POLR3D	FRK	CENPC1	CHEK1	CDC16	MYC	MXI1	CDC6	BUB3	CDC42	CDC25A	CDC25B	CDK7	CDK2	CHES1	NUMA1	TP73	TFDP2	CCNE1	BUB1B	MDM2	CDC27	TP53	CDKN2A	CDC14A	RBBP2	DDX11	CCNE2	CDKN2B	CDC45L	MAX	ZW10	CENPA	GAS2	CDC37	CCND2	CDC25C	CCND1	BCCIP	SKP2	CPR2	GAS1	TTK	GSPT1	CDC20	MAD1L1	CNK	MNAT1	CDKN1B	CENPF	MAD	E2F1	BUB1	CDKN1C	CCNA2	CCNF	CDC7	CDC2	CDC2L1	RBL1	GADD45B	CDK4	CCNB1	RB1	PLK	MOS	CCND3	CDKN1A	NPM1	CDK5
CR_CYTOSKELETON	PNAS_2005	FLNA	MAP1B	GSN	MYL2	VIM	PTCH	CETN1	TUBA1	PFN1	BPAG1	RSN	TUBA2	EMS1	KISS1	SPTB	ACTG1	MYL3	VCL	MUC1	MAPT	MSN	TTN	TLN1	SPTA1	MCF2
CR_DEATH	PNAS_2006	BIK	TNFRSF10D	CASP1	DAPK1	TRAF3	CASP6	CRADD	IL17	CASP7	CASP3	GML	BAG4	CFLAR	NME3	TP53BP2	TNFRSF10B	MYC	MXI1	TNF	TRAF2	BCL2	BCL2A1	TNFSF10	BAK1	TFPT	DPF2	TP73	MDM2	TP53	LTB	TP73L	TNFRSF6	DAXX	BCL2L1	BID	LTA	HRK	CIDEA	CASP9	MAX	BNIP2	F2R	BFAR	PAWR	AATF	BNIP3	DAPK3	DAP3	EVI1	BAX	CASP8	MYD88	BNIP1	CASP10	TNFSF7	CASP4	TRADD	MAD	IKBKG	FADD	CASP5	TNFRSF9	STK17B	BAD	DAP	BCL2L2	TNFSF5	EMP1	TNFRSF10A	STK17A	CASP2	PLAGL1	TNFRSF25	TNFSF6	FOSL2	APAF1
CR_DNA_MET_AND_MOD	PNAS_2007	DNMT2	CHC1	HMGA1	TERT	OAS1	LIG1	TK2	MCM4	MBD2	S100A11	NME6	RFC3	TEP1	ADK	POLB	MLL	TERF1	LIG3	DNMT1	HMGA2	TERF2IP	MBD4	RFC4	PCAF
CR_HORMONAL_FUNCTIONS	PNAS_2008	ESR1	HSD17B2	NKX3-1	FSHR	THRB	GIP	STAR	PGR	ADRBK1	THRA	BAG1	SSTR2
CR_IMMUNE_FUNCTION	PNAS_2009	IL13	CD36	CD33	IL4	MICA	IL6ST	IL17	CD68	CD24	TFE3	FCGR2B	IFNG	CD2	IL1B	IFNB1	HCA127	CD48	CD37	CD8A	GAGE4	LAG3	IL10	IFNA1	IL18R1	SLAMF1	CD19	IL16	CD53	MAGED2	CD58	NKTR	CD63	IL15	CD14	IFNAR2	CD1D	IFNGR1	BAGE	CD47	CD59	IL2RB	CD7	IL12RB1	CD72	CD4	BTK	CD69	IFNAR1	CD34	HLA-C	CD9	CD97	CTAG2	CD22
CR_PROTEIN_MOD	PNAS_2010	PDK2	HDAC4	PRKCL1	PTPRC	PRKG1	PTPRM	NAT2	RYK	PRKACG	CTSD	MME	HCK	PRKCZ	RPS6KB1	EP300	PIM1	PDPK1	TESK1	PPP2R3A	PRKCL2	PTPRD	PTPN12	ABL2	HDAC5	PIK3CA	BLK	PTPN6	PTPRF	PTPRK	HDAC6	PRKAG1	PPEF1	DUSP8	HPN	PTPN7	PPP1CC	TBCC	PRKCB1	LTK	PRKAR1A	PTK9	LIMK1	PPP2R5A	ACP5	SIAT1	PTPN9	PTP4A1	RAGE	CSNK1E	USP4	LYN	PTP4A2	PRKCG	STK11	CSNK2A2	USP6	PPP2CA	DUSP7	PAK2	MATK	USP5	LIMK2	PRKCI	PPM1D	ST13	PTPN18	FURIN	YES1	LCK	CTSB	PRKR	PPP4C	RPS6KA2	IL3RA	FER	FGR	DPP4	UBE2N	PTPRR	PRKACA	PRSS25	BMX	PPP1R3A	PRKDC	ABL1	PRKACB	CHUK	CUL1	PRKCA	PPP1CB	DUSP9	PHKG2	TMPRSS2	PAPSS1	VHL	PRKAR1B	PRKCM	DUSP5	DMPK	PPP2R4	PTK7	PDK4	PTPN11	CSNK2B	PPP2R1B	PTPN4	PRKAR2B	DUSP3	PTPN2	CUL2	ELK3	PTPRZ1	UCHL3	PTPN1	PTPN13	ACPP	CSNK1D	PTPRG	BCR	PPP3CA	PRKCQ	PPP5C	PPP3CB	DUSP4	KIT	PTPRH	STK3	ACP2	PPP2R2A	FES	PPP2R5D	STK4	PPP6C	ACP1	PTPRB	PPP1CA	ANPEP	SKI	PTPRN2	CSNK1A1	PRKG2	PPP2R5E	PTPRN	UBE2I	PTPRA	ELK1	PCAF	PTPN3	PHKA2	PPP2R5B
CR_REPAIR	PNAS_2011	FEN1	DDB1	ERCC5	ALKBH	EXO1	RAD51L1	XPA	FRAP1	BRCA2	APEX1	RAD17	MSH3	ADPRT	RAD54L	OGG1	XRCC3	RAD9A	RAD23A	BRCA1	PMS2	POLD1	RAD52	MSH6	ERCC1	PMS1	XPC	XRCC5	MLH1	PCNA	G22P1	CKN1	ERCC4	RAD50	RAD23B	RAD1	MSH2	ERCC3	PIR51	CHEK2	RAD51	DDB2
CR_SIGNALLING	PNAS_2012	TANK	WNT5A	ILK	CALM1	MAP3K8	MAP3K7IP1	SUFU	IL17	ARHGEF12	ITGA6	PDPK1	FLT3LG	ARHGAP6	MAPK7	TYK2	GPRK6	ABL2	MAP2K2	ARHGAP1	DGKQ	PTPRK	ERG	SYK	FYN	AKAP13	MAP3K3	NOTCH3	ARHC	IFNAR2	MAPK4	ITGA7	MYD88	MAP2K1	CXCL12	NOTCH4	IKBKG	AXL	IL8	IFNAR1	TRIP	MAP3K4	MSF	ARHB	RALBP1	ARHA	MAP2K6	IL6ST	MCC	ITGA4	PTCH	ITGA5	ABL1	NRAS	STAT5B	STAT6	ARHI	MADH7	ITGA3	NF1	ARHGEF16	SRC	GNB1	ITGA1	IL18R1	ATM	ITGA2	IGFBP3	NCK1	APC	APCL	STAT3	SKIL	TTK	BCR	TNFSF13	SH3BP2	BRAF	BTK	TNFRSF4	SFN	MAP3K12	MAPK1	TNFRSF10A	ITGA9	ITGAE	IL13	TNFRSF10C	TRAF3	RELA	MAPK11	ITGB8	BIRC2	CTNNB1	IRS1	RGS16	MAP2K7	TNFRSF10B	MAS1	RAP1A	TNF	ARAF1	DLG1	AKT2	IGFBP1	IFNG	MKNK1	IL1B	HRAS	MAP3K14	TNFSF4	MADH2	JAK3	TNFRSF14	IL10	ITGB7	ITGAV	ZAP70	STAT5A	ITGB3	VAV1	PIK3C3	TNFRSF1A	VIPR1	CRK	YWHAE	ITGB4	AKT1	TNFRSF1B	STAT2	INHA	DGKG	IFNGR1	RAF1	DGKA	IL2RB	TYRO3	MUSK	MAPK12	IL12RB1	RAN	CRKL	CAMK4	MAPK9	JAK1	STAT1	TIAM1	PTCH2	GRB7	TRAF1	PTK2B	GRF2	PIK3CG	WNT4	MADH4	ROS1	WNT1	ITGB1	GRB14	SMO	WNT2	TRAF6	RHOK	MAPK13	JAG1	IFNB1	AXIN1	ROCK1	CMKOR1	MAP3K5	AXIN2	MAPK10	ITGB5	RELB	JAG2	ITGAX	SOS1	CXCL3	IL15	MAP4K4	IQGAP2	SHC1	ITGAM	MAPKAPK5	CXCL1	MPL	BCL10	MAP2K4	KRAS2	RASA1	CXCL2	MAP2K3	IRS2	REL	MAPKAPK2	ITGB2	ITGAL	MAP2K5	PTEN
CR_TRANSCRIPTION_FACTORS	PNAS_2013	PPARA	HKR3	EGR3	GLI	FOSL1	FLI1	NME1	RELA	WT1	PAX7	ETV1	MYBL2	PBX1	IRF4	EGR1	FOXD2	MYBL1	AHR	ZNFN1A1	MYOD1	ETS1	MYC	GAS41	MYB	STAT5B	JUND	TIEG	CBFB	STAT6	CHES1	DPF2	TCF7L2	MLLT7	SMARCA4	SPI1	RELB	PML	GLI3	CBFA2T1	MYCN	MAFG	BCL6	STAT5A	JUNB	FOSB	MADH3	RUNX1	JUN	ETV6	AATF	MAF	LMO1	CEBPA	PBX2	ETS2	NFKB2	STAT3	ETV3	FOXD1	FOXF1	RXRA	SRF	GLI2	CBFA2T3	TLX1	REL	ATF1	LITAF	EHF	FOS	FOSL2
CR_TRANSPORT	PNAS_2014	SLC22A1L	NUP98	ABCC4	NUP214	TPR	KPNB1	SLC14A1
CR_TRANSPORT_OF_VESICLES	PNAS_2015	RAB7	RAB27A	PIK3C3	RAB26	RAB27B	AP2M1	AP3D1	RAB1A	RAB4A	RAB2L	RAB31	MEL	RAB11A	RAB33A	RAB3A	ACTR1A	RAB5C	RAB10	RAB2	RAB3B	RAB7L1	RAB5B	RAB13	RAB5A	GOLGA4	RAB6A
crebPathway	CREB is a transcription factor that binds to cAMP-responsive elements (CREs) to activate transcription in response to extracellular signaling.	CAMK2D	PRKAR2A	SOS1	PRKCB1	MAPK14	RAC1	PRKAR2B	MAPK3	PRKAR1A	AKT1	ADCY1	PRKACG	PIK3R1	PRKACB	CAMK2G	PRKCA	CAMK2A	GRB2	HRAS	CAMK2B	PIK3CA	PRKAR1B	RPS6KA5	CREB1	GNAS	MAPK1	RPS6KA1
cremPathway	The transcription factor CREM activates a post-meiotic transcriptional cascade culminating in spermatogenesis.	ADCY1	FSHB	FSHR	FHL5	XPO1	GNAS	CREM
cskPathway	Csk inhibits T-cell activation by phosphorylating Lck; Csk is regulated by cAMP-dependent kinases and is opposed by the T-cell activator CD45.	TRB@	CD3E	PRKAR2A	HLA-DRA	CD3Z	ZAP70	GNGT1	PRKACB	TRA@	LCK	PRKAR2B	CD4	PRKAR1A	PTPRC	CSK	PRKACG	ADCY1	CD3G	PRKAR1B	GNAS	GNB1	CD3D	HLA-DRB1	CREBBP
ctla4Pathway	T cell activation requires interaction with an antigen-MHC-I complex on an antigen-presenting cell (APC), as well as CD28 interaction with the APC's CD80 or 86.	CD3E	TRB@	IL2	HLA-DRA	CD3Z	PTPN11	ICOS	CTLA4	GRB2	TRA@	LCK	ICOSL	CD86	PIK3CA	CD3G	PIK3R1	ITK	CD80	CD3D	HLA-DRB1	CD28
ctlPathway	Cytotoxic T lymphocytes induce apoptosis in infected cells presenting antigen-MHC-I complexes via the perforin and Fas/Fas ligand pathways.	TRB@	CD3E	CD3Z	TRA@	PRF1	GZMB	CD3G	HLA-A	ICAM1	TNFRSF6	CD3D	ITGB2	ITGAL	TNFSF6	B2M
cxcr4Pathway	CXCR4 is a G-protein coupled receptor that responds to the ligand SDF-1 by activating Ras and PI3 kinase to promote lymphocyte chemotaxis.	RAF1	PIK3C2G	CXCL12	GNAQ	GNAI1	GNGT1	PTK2	HRAS	PRKCB1	PRKCA	BCAR1	CXCR4	CRK	PXN	RELA	MAPK3	PIK3CA	PIK3R1	PLCG1	PTK2B	NFKB1	MAPK1	MAP2K1	GNB1
cytokinePathway	Intercellular signaling in the immune system occurs via secretion of cytokines, which promote antigen-dependent B and T cell response.	IL13	TNF	IL2	IL12B	IL16	IL9	IFNG	IL5	IL8	IL12A	IL4	IFNB1	IL1A	IL3	IL15	IL18	IL17	IL14	IL6	IFNA1	IL10	LTA
d4gdiPathway	D4-GDI inhibits the pro-apoptotic Rho GTPases and is cleaved by caspase-3.	CASP9	CASP1	ARHGDIB	JUN	CYCS	PRF1	GZMB	CASP3	ADPRT	CASP8	ARHGAP5	CASP10	APAF1
dbpbPathway	BLACK	NSEP1	PROCR	PDGFB	F2
dcPathway	Dendritic cells internalize and present antigen, after which they migrate to lymphocyte-rich tissues and induce T and B cell differentiation.	IL13	IL12B	TLR9	IFNG	ITGAX	CD7	CD2	IL5	TLR4	CD33	IL12A	IL4	IFNB1	IL3	CSF2	CD5	ANPEP	TLR2	TLR7	TNFRSF5	IFNA1	IL10
deathPathway	Death receptors such as Fas and DR3, 4, and 5 transduce pro-apoptotic signaling by oligomerizing to activate the caspase cascade.	CASP9	NFKBIA	GAS2	RELA	CASP6	CASP3	CASP7	BIRC4	BIRC2	CFLAR	RIPK1	CASP8	CASP10	TNFRSF10B	LMNA	TRAF2	BIRC3	TRADD	BCL2	CHUK	SPTAN1	FADD	TNFSF10	MAP3K14	CYCS	DFFB	NFKB1	TNFRSF10A	TNFSF12	TNFRSF25	DFFA	BID	APAF1
DNA_DAMAGE_SIGNALLING	GO	HUS1	GTSE1	FEN1	ERCC5	TREX1	BTG2	XPA	PURA	APEX1	BIRC2	RAD9A	RAD23A	CHEK1	LGMN	BRCA1	PMS2	TNFRSF10B	UNG	TNF	CDC6	PRKDC	PTPRCAP	RAD52	BIRC3	CDC25A	XPC	CDC25B	MLH1	CKN1	BAK1	LIG4	TNFSF4	ERCC4	DKFZP566E144	MDM2	TP53	PIN1	RAD1	ATRX	MSH2	ERCC3	CHEK2	TNFRSF6	RRM2B	RAD51	XRCC2	ERCC2	ATM	BCL6	DDB1	XRCC1	RPL13A	H2AFY	BNIP3	CDC25C	BRCA2	RAD17	MSH3	LRDD	GADD45A	WEE1	CDKN2D	BAX	BBC3	ARTN	PPIA	FOXO3A	CDS1	CDC20	XRCC4	TERT	MSH6	REV3L	ERCC1	H2AFZ	XRCC5	PCNA	MRE11A	MPG	SRPX	ATR	RAD50	RAD23B	GADD45G	GAPD	TNFRSF4	SESN1	GADD45B	CDK4	CDKN1A	REPRIMO	PPM1D	APAF1	DDB2	ACTB
dnafragmentPathway	DNA fragmentation during apoptosis is effected by DFF, a caspase-activated DNAse, and by endonuclease G.	HMGB2	GZMB	DFFB	ENDOG	CASP7	CASP3	TOP2B	TOP2A	HMGB1	DFFA
dreamPathway	The transcription factor DREAM blocks expression of the prodynorphin gene, which encodes the ligand of an opioid receptor that blocks pain signaling.	PRKAR2A	PRKACB	PRKAR2B	POLR2A	JUN	MAPK3	PRKAR1A	OPRK1	PRKACG	PRKAR1B	CSEN	CREB1	FOS	CREM
drug_resistance_and_metabolism	BioCarta	GSTP1	EPHX1	CYP2B6	ABCC1	CYP2E1	SOD1	NAT2	TPMT	TOP2B	TOP2A	AHR	TYMS	BRCA1	RXRG	MYC	ERBB4	CDK2	CYP3A5	PPARGC1	TOP1	CCNE1	ABCC5	TP53	DHFR	MSH2	ERCC3	ABCB1	BCL2L1	TNFRSF11A	ERBB3	EPHX2	CRABP1	ERBB2	GSTM1	CCND1	GSK3A	CDKN2D	PPIA	RARB	CDKN1B	STE	MGMT	CYP2C8	RXRB	RB1	RARG	SRD5A2	CYP2C9	PPARA	ABCC3	IGF1R	IGF2R	ABCC2	RARA	XPA	MET	PPARG	NFKBIB	CRR9	BCL2	XPC	MLH1	ABCC6	PPARD	CYP2C19	HIF1A	BLMH	CDKN2A	RELB	CYP2D6	ATM	ESR1	EGFR	COMT	ESR2	RPL13A	FGF2	BRCA2	MSH3	CYP3A4	ABCG2	BAX	MVP	NQO1	CYP1A2	APC	NFKB2	CYP1A1	RXRA	NFKBIE	AP1S1	AR	ARNT	GAPD	CDK4	NFKB1	FOS	CDKN1A	ELK1	ACTB
ecmPathway	Extracellular matrix induces integrin-mediated FAK phosphorylation in epithelial cells, leading to PI3 and MAP kinase activation and actin reorganization.	RAF1	PTK2	HRAS	PXN	GSN	MAPK3	DIAPH1	MYL2	ROCK1	ITGB1	MYLK	PIK3CA	PIK3R1	TLN1	MAPK1	SRC	ITGA1	MAP2K1	SHC1	ARHGAP5	PFN1	FYN	ARHA
edg1Pathway	The lipid S1P is an EDG1 ligand promoting chemotaxis via Rac1 and cell survival and proliferation via ERK activation.	SMPD2	ITGB3	GNGT1	PRKCB1	PDGFRA	SMPD1	RAC1	MAPK3	AKT1	PDGFA	ADCY1	PIK3R1	GNAI1	PTK2	PRKCA	PLCB1	SPHK1	ASAH1	PIK3CA	EDG1	MAPK1	SRC	GNB1	ITGAV	SKIP	ARHA
eea1Pathway	The FYVE-finger proteins EEA1 and HRS are localized to endosome membranes and regulate sorting and ubiquitination in the vesicle transport system.	EGFR	TFRC	RAB5A	EGF	HGS	TF	EEA1
EGF_receptor_signaling_pathway	BioCarta	EGFR	SHC3	NAP4	EGF	GRB2	GAB1	EPS15	EREG	EPS8	GRB7	SHC1	NCK2	PYGO2	REPS2
egfPathway	The epidermal growth factor (EGF) peptide stimulates the EGF receptor to promote cell proliferation via the MAP kinase and Ras pathways.	EGFR	STAT5A	SOS1	PRKCB1	MAPK3	JUN	PIK3R1	PLCG1	MAP2K1	SHC1	STAT3	RAF1	MAP2K4	RASA1	MAP3K1	SRF	EGF	PRKCA	GRB2	HRAS	JAK1	STAT1	PIK3CA	CSNK2A1	FOS	ELK1	MAPK8
egfr_smrtePathway	EGF receptor activation inhibits SMRT, a transcriptional co-repressor that interacts with transcription factor complexes and gene silencers.	EGFR	RXRA	THRB	MAP3K1	EGF	MAPK14	MAP2K1	NCOR2	RARA	THRA	ZNF145
Eicosanoid_Synthesis	BioCarta	PLA2G6	PTGDS	PTGS2	LTA4H	ALOX12	ALOX15B	PTGIS	ALOX15	PLA2G2A	TBXAS1	ALOX5AP	ALOX5	LTC4S	PTGS1	DPEP1
eif2Pathway	Eukaryotic initiation factor 2 (EIF2) initiates translation by transferring Met-tRNA to the 40S ribosome in a GTP-dependent process.	EIF2S1	HRI	GSK3B	PPP1CA	EIF2AK4	EIF5	EIF2S3	EIF2AK3	EIF2B5	EIF2S2	PRKR
eif4Pathway	The eIF-4F complex recognizes 5' mRNA caps, recruits RNA helicases, and maintains mRNA-ribosome bridging.	EIF4G2	PABPC1	PDPK1	GHR	MKNK1	PRKCB1	PDK2	PRKCA	MAPK14	MAPK3	AKT1	EIF4G1	EIF4E	FRAP1	EIF4A1	PIK3CA	PIK3R1	EIF4EBP1	MAPK1	EIF4G3	EIF4A2	IRS1	PTEN	RPS6KB1
electron_transport	BioCarta	CYP4A11	CYP11A1	CYP39A1	CYP7A1	PTGIS	CYBRD1	CYP2B6	CYP2E1	CYP2C18	CYP19A1	FADS2	CYP27B1	CYP8B1	TSAP6	HCCS	CYP7B1	FADS1	FLJ20359	CYP24A1	CYP2A13	CYP2S1	CYB561	UQCRB	SMOX	SCO2	FADS3	FRDA	UGDH	FLJ32499	CYP1B1	CYB5	DHODH	EIF2AK3	SCO1	CYP3A5	CYP4F11	CYP2J2	CYP51A1	STEAP2	PGRMC1	MAOA	CYP20A1	CYP2D6	MGC32124	CYP21A2	MGC20446	CYP17A1	CYP4B1	CYB5-M	CYP11B2	CYP4F12	CYP26A1	CYP27A1	PAOX	UQCRH	CYP3A4	TBXAS1	NUP62	SUOX	CYP1A2	ERN1	OXA1L	MAOB	CYP1A1	SPUF	CYP4F8	SURF1	NCB5OR	CYP3A43	AOF1	P450RAI-2	FDXR	CYP4F3	PGRMC2	CYP2C8	CYP2A7	CYP2F1	CYP2A6	ALAS2	CYP46A1	KIAA0090	FLJ23153	UQCRC1	PPOX	CYP3A7	CYP2C9	CYP4F2
Electron_Transport_Chain	BioCarta	QP-C	ATP5J2	NDUFS2	NDUFC2	NDUFA10	ATPIF1	UQCRFS1	NDUFB8	ATP5J	NDUFA2	SLC25A27	UQCRC2	NDUFB6	UQCR	NDUFAB1	COX15	NDUFB7	ATP5S	ATP5C1	COX5A	UQCRB	COX6A2	NDUFA6	ATP5I	NDUFS7	NDUFB4	NDUFC1	SALL3	SCO1	COX5B	COX7A1	ATP5B	CYCS	NDUFS8	NDUFB9	LALP1	UCP3	AFG3L2	ATP5G3	ATP5O	SDHD	UCP2	NDUFA5	NDUFB10	ATP5F1	ATP5G2	NDUFB2	COX7A2L	ATP5A1	NDUFA7	NDUFB5	ZNF183	NDUFS1	SLC25A5	COX8	UQCRH	COX6C	NDUFA8	SDHB	NDUFB3	SLC25A6	POPDC2	NDUFS4	NDUFA9	SLC25A14	COX4I1	ATP5L	NDUFS6	COX7C	COX6A1	NDUFV1	TBDN100	UCP1	NDUFB1	DAP13	NDUFA3	COX7A2	SURF1	ATP5H	NDUFS5	ATP5G1	SDHA	NDUFA4	COX7B	NDUFV2	SDHC	NDUFS3	COX6B	HSPC051	UQCRC1	COX11	ATP5E	LOC339231	SLC25A4	ATP5D
electron_transporter_activity	BioCarta	TSTA3	SARDH	MTHFD2	ALOX15B	PHYH	MTRR	GPX5	GPX2	PGD	CYP24A1	COX5A	MB	RODH-4	ALDH9A1	ALDH2	CDO1	PDHX	GPX4	CYP4F11	PDIP	PAM	AKR1D1	AKR1A1	P4HB	ALDH5A1	TXN	CYP26A1	ALDH1A2	ADH5	DDO	TXNL	GPX3	ME1	NCF1	QDPR	PHGDH	ALDH1A1	IDH3B	WWOX	TXNDC5	NNT	DEGS	PLOD	SRD5A2	COX11	ME2	NCF2	DAO	RODH	CYP11A1	LOXL2	QSCN6	CYP39A1	KMO	NCF4	CYP19A1	DHCR7	HMOX2	AKR1B10	FTHFD	ME3	ERP70	P5	UQCR	LOC51061	ALOX12B	COX15	NOX4	GRHPR	ETFB	KIAA1833	UGDH	CYP1B1	EPX	CYC1	ADH6	AOC3	CYCS	LOXL1	GLDC	LALP1	AOC2	ADH7	SDHD	RRM2B	INDO	DHRS4	BLVRA	ADH1A	DHRS3	SRD5A1	SPR	AKR7A2	TXNL2	AKR7A3	HSD17B8	TXNDC2	CYP1A2	HPGD	P4HA2	MAOB	PDIR	ALDH4A1	GRP58	HNRPM	HAAO	GSR	AKR1C4	ZFP90	SDHA	ADH1B	AKR1C1	PRDX2	TXN2	FLJ20793	ASPH	AKR1C3	PRDX5	NQO2	ALDH3A1	AKR1C2	AKR1B1	ADH1C	H6PD	DHDH	DHRS2	PPOX	TXNDC3
eosinophilsPathway	Recruitment of eosinophils in the inflammatory response observed in asthma occurs via the chemoattractant eotaxin binding to the CCR3 receptor.	HLA-DRA	CCL11	IL5	CCR3	IL3	HLA-DRB1	CCL5	CSF2
ephA4Pathway	Eph kinases are receptor tyrosine kinases that bind surface-expressed ephrin ligands and are active in neuronal development and platelet aggregation.	ITGB1	SELP	EPHA4	L1CAM	RAP1B	LYN	ITGA1	ACTA1	FYN	EPHB1
eponfkbPathway	The cytokine erythropoietin (Epo) prevents stress-induced neuronal apoptosis by stimulating anti-apoptotic pathways through JAK2 kinase and NF-kB.	EPOR	HIF1A	NFKBIA	JAK2	NFKB1	EPO	SOD2	CDKN1A	RELA	GRIN1	ARNT
epoPathway	Erythropoietin, which activates the MAPK pathway, stimulates erythrocyte production and is an effective treatment for anemia.	RAF1	EPOR	STAT5A	JAK2	SOS1	GRB2	STAT5B	HRAS	JUN	MAPK3	PTPN6	CSNK2A1	PLCG1	EPO	FOS	MAP2K1	SHC1	ELK1	MAPK8
erbb3Pathway	Neuregulins bind to the receptor tyrosine kinases ErbB3 and ErbB4, surface-localized receptors whose overexpression induces tumor formation.	UBE2D1	EGFR	ERBB3	EGF	NRG1
erbb4Pathway	ErbB4 (aka HER4) is a receptor tyrosine kinase that binds neuregulins as well as members of the EGF family, which also target EGF receptors.	PSEN1	ERBB4	NRG2	PRKCA	PRKCB1	NRG3	ADAM17
erk5Pathway	Signaling between a tissue and its innervating axon stimulates retrograde transport via Trk receptors, which activate Erk5, which induces transcription of anti-apoptotic factors.	MEF2B	NTRK1	MEF2C	GRB2	HRAS	MAPK7	MAPK3	AKT1	MEF2D	PIK3CA	PIK3R1	PLCG1	CREB1	MEF2A	MAPK1	RPS6KA1	SHC1
erkPathway	Cell growth is promoted by Ras activation of the anti-apoptotic p44/42 MAP kinase pathway.	IGF1R	EGFR	GNGT1	SOS1	PDGFRA	MAPK3	ITGB1	NGFR	PTPRR	MAP2K1	SHC1	STAT3	MYC	RAF1	NGFB	MKNK1	KLK2	GRB2	HRAS	MKNK2	DPM2	MAP2K2	RPS6KA5	GNAS	MAPK1	RPS6KA1	PPP2CA	SRC	GNB1	ELK1
erythPathway	Erythropoietin selectively stimulates erythrocyte differentiation from CFU-GEMM cells in bone marrow.	CSF3	KITLG	IL9	TGFB2	IL1A	IL3	TGFB3	CSF2	IGF1	IL11	EPO	IL6	TGFB1	CCL3	FLT3
etcPathway	Energy is extracted from carbohydrates via oxidation and transferred to the mitochondrial electron transport chain, which couples ATP synthesis to the reduction of oxygen to water.	GPD2	MTCO1	ATP5A1	SDHD	SDHC	NDUFA1	UQCRC1	SDHA	CYCS	SDHB
etsPathway	The Ets transcription factors are activated by Ras and promote macrophage differentiation.	E2F1	DDX20	HRAS	SIN3B	RBL2	JUN	HDAC5	HDAC2	E2F4	RBL1	CSF1	FOS	NCOR2	ETS2	SIN3A	CSF1R	ETV3	ETS1
extrinsicPathway	The extrinsic prothrombin activation pathway requires the release of thromboplastin from damaged tissues to activate the blood clotting cascade.	FGG	SERPINC1	F5	F2R	FGA	F2	F7	F3	TFPI	PROC	F10	PROS1	FGB
fasPathway	Binding of the Fas ligand to the Fas receptor induces caspase activation and consequent apoptosis in the Fas-expressing cell.	LMNB2	MAP3K7	ARHGDIB	CASP6	JUN	RIPK2	PTPN13	CASP7	CASP3	ADPRT	PAK1	CFLAR	CASP8	CASP10	LMNA	PRKDC	MAP2K4	FAF1	MAP3K1	SPTAN1	FADD	LMNB1	DFFB	RB1	TNFRSF6	PAK2	DAXX	TNFSF6	DFFA	MAPK8
Fatty_Acid_Degradation	BioCarta	ACADL	GPD2	HADHB	FACL4	HADHA	CPT1A	ACADVL	CPT2	ACADS	ACADSB	HADHSC	FACL6	FACL2	ACAA2	GK	ACADM	TPI1	SLC25A20	CPT1B	GRCC9	GK2	FACL3	CRAT	FACL5	LPL
fatty_acid_metabolism	BioCarta	FAAH	PPARA	CYP4A11	CD36	OKL38	LIPE	PCCA	FABP1	ALOX12	ALOX15B	DHRS3	ABCD2	SC4MOL	FABP7	ACOX3	PECI	ACADSB	FABP2	FACL2	FASN	CYP2J2	PECR	ASAH1	CROT	LPL	GNPAT
Fatty_Acid_Synthesis	BioCarta	ACACB	ACAA2	PRKAG3	FASN	ACACA	PRKAG2	PRKAA2	ACLY	SLC25A1	PC	PRKAB1	SCD	PRKAG1	PRKAA1	PRKAB2	HADHSC
fbw7Pathway	Cyclin E interacts with cell cycle checkpoint kinase cdk2 to allow transcription of genes required for S phase, including transcription of additional cyclin E.	CCNE1	E2F1	SKP1A	TFDP1	CUL1	CDK2	RB1	CDC34	FBXW7
fcer1Pathway	In mast cells, Fc epsilon receptor 1 activates BTK, PKC, and the MAP kinase pathway to promote degranulation and arachnidonic acid release.	VAV1	SOS1	PRKCB1	PPP3CC	MAPK3	JUN	CALM1	NFATC3	PIK3R1	PLCG1	SYT1	CALM2	MAP2K1	NFATC2	SHC1	MAP2K7	PPP3CA	RAF1	CALM3	PPP3CB	MAP2K4	NFATC1	FCER1A	MAP3K1	HRAS	LYN	GRB2	PLA2G4A	BTK	PIK3CA	NFATC4	MAPK1	PAK2	FOS	SYK	ELK1	MAPK8	FCER1G
feederPathway	Sugars such as mannose, galactose, and fructose are enzymatically converted to glucose via "feeder" pathways that lead to glycolysis.	TREH	PYGM	HK1	PGM1	MPI	LCT	TPI1	KHK	PYGL
fibrinolysisPathway	Thrombin cleavage of fibrinogen results in rapid formation of fibrin threads that form a mesh to capture platelets and other blood cells into a clot.	FGG	F13A1	PLG	SERPINB2	PLAU	FGA	F2R	CPB2	PLAT	SERPINE1	F2	FGB
flumazenilPathway	Flumazenil is a benzodiazepine receptor antagonist that may induce protective preconditioning in ischemic cardiomyocytes.	GABRA5	GPX1	GABRA2	SOD1	GABRA3	GABRA4	GABRA1	PRKCE	GABRA6
fmlppathway	The fMLP receptor is a G-protein coupled receptor in neutrophiles that recognizes formylated bacterial peptides and activates NADPH oxidase.	GNA15	GNGT1	NFKBIA	MAPK14	PPP3CC	RAC1	MAP2K6	RELA	MAPK3	CALM1	NFATC3	PAK1	SYT1	CALM2	MAP2K1	NFATC2	PPP3CA	CALM3	PIK3C2G	RAF1	PPP3CB	CAMK1	NFATC1	MAP3K1	HRAS	NCF1	MAP2K3	PLCB1	NFATC4	MAP2K2	NFKB1	MAPK1	GNB1	FPR1	ELK1	NCF2	CAMK1G
fosbPathway	BLACK	PPP1R1B	GRIA2	JUND	FOSB	CDK5
freePathway	Neutrophils release superoxide to induce lysis in invading bacteria; in neighboring endothelial cells, superoxide dismutase scavenges radicals but produces pro-apoptotic peroxides.	XDH	GPX1	NOX1	TNF	SOD1	NFKB1	GSS	IL8	GSR	RELA
fxrPathway	The nuclear receptor transcription factors FXR and LXR are activated by cholesterol metabolites and regulate cholesterol homeostasis.	NR1H4	RXRA	FABP6	NR0B2	NR1H3	LDLR
G13_Signaling_Pathway	BioCarta	PIK3R2	WASL	ARHGDIB	CIT	RAC1	PRKCL1	RHPN2	ARHGDIG	DIAPH1	PAK3	CALM1	LIMK1	RTKN	MYBPH	PIK3CD	PIK3CB	IQGAP2	CALM2	PFN1	PLA2G12	IQGAP1	CALM3	CDC42	CFL2	PPP1CB	CFL1	WAS	ARHGEF1	GNA13	MAP3K4	PIK3CA	PIP5K2A	MAPK10	ARHA
g1Pathway	BioCarta	ATM	TGFB2	CDK6	MADH4	TFDP1	MADH3	CCNA1	CCND1	HDAC1	SKP2	ABL1	GSK3B	CDKN1B	E2F1	CDC25A	CDK2	TGFB3	ATR	CCNE1	CDC2	TP53	DHFR	CDKN2A	CDK4	RB1	CDKN1A	TGFB1	CDKN2B
g1pPathway	BLACK	GALK1	GALE	GALT
g2Pathway	BioCarta	ATM	PRKDC	EP300	CDC25A	CDC25B	ATR	YWHAQ	CDC2	CDC25C	MDM2	GADD45A	WEE1	TP53	CDKN2D	CHEK2	YWHAH	CCNB1	RPS6KA1	PLK	CDC34	CDKN1A	CHEK1	BRCA1	MYT1
gabaPathway	BioCarta	GABRA5	NSF	GABRA2	DNM1	GPHN	GABRA3	SRC	GABRA4	GABRA1	GABARAP	GABRA6	UBQLN1
gata3Pathway	BioCarta	IL13	GATA3	NFATC1	PRKAR2A	PRKACB	JUNB	IL5	MAPK14	MAP2K3	PRKAR2B	IL4	PRKAR1A	MAF	PRKACG	PRKAR1B	NFATC2
gcrPathway	BioCarta	CALM3	ADRB2	GNGT1	NR3C1	CRN	HSPCA	RELA	AKT1	CALM1	NOS3	PIK3CA	PIK3R1	NFKB1	ANXA1	GNAS	SYT1	CALM2	GNB1	NPPA
ghPathway	BioCarta	STAT5A	GHR	JAK2	SOS1	SLC2A4	PRKCB1	GH1	MAPK3	INS	PIK3R1	PLCG1	INSR	MAP2K1	SHC1	IRS1	SOCS1	RAF1	SRF	PRKCA	TCF1	GRB2	STAT5B	HRAS	PIK3CA	PTPN6	MAPK1	RPS6KA1
gleevecPathway	BioCarta	RAF1	MAP2K4	STAT5A	MAP3K1	BCL2	JAK2	SOS1	GRB2	STAT5B	HRAS	CRKL	JUN	MAPK3	AKT1	STAT1	PIK3CA	PIK3R1	FOS	MAP2K1	MAPK8	BCR	MYC
Glycogen_Metabolism	BioCarta	PYGM	PHKB	PPP2R2C	PPP2R1B	PPP2CB	PPP2R5A	CALM1	GSK3A	CALM2	AGL	CALM3	PPP2R5C	GSK3B	UGP2	PPP2R3A	PYGB	GYG2	PPP2R2A	PHKG2	PR48	PPP2R5D	PYGL	GYS2	PPP2R2B	PPP2R1A	PHKG1	PGM1	GYG	PHKA1	PPP2R5E	GYS1	GBE1	PPP2CA	PPP2R4	PPP2R5B	PHKA2
glycolysisPathway	BioCarta	GAPD	HK1	PKLR	GPI	ALDOB	PGK1	PFKL	PGAM1	TPI1	ENO1
gpcrPathway	BioCarta	PRKAR2A	GNGT1	PRKCB1	PPP3CC	RPS6KA3	PRKAR2B	JUN	MAPK3	PRKAR1A	CALM1	ADCY1	PRKACG	NFATC3	PLCG1	SYT1	CALM2	MAP2K1	NFATC2	PPP3CA	CALM3	RAF1	PPP3CB	GNAQ	GNAI1	NFATC1	PRKACB	HRAS	PRKCA	PRKAR1B	NFATC4	GNAS	CREB1	FOS	GNB1	ELK1
GPCRs_Class_A_Rhodopsin-like	GO	AVPR1B	GALR1	AVPR2	DRD4	GPR17	ADRA2C	OXTR	CCR3	NPY5R	GPR50	HTR2C	CCR8	GPR66	TSHR	GPR105	DRD3	OPN3	GALR3	LHCGR	PPYR1	NMBR	MC1R	CCR9	GALR2	AVPR1A	MAS1	ET(B)R-LP-2	BDKRB1	FPRL1	CHRM1	HTR2B	GPR87	ADRA1B	CHRM2	EDNRA	CMKLR1	CCR7	OPRK1	CNR1	GPR86	P2RY12	OR7C1	CCR5	CHRM4	GPR91	CHRM5	CCBP2	GPR63	GRPR	ADORA3	IL8RB	GPR35	F2R	VIPR1	FKSG79	CNR2	FPRL2	GPR24	P2RY5	PTGER3	HTR1D	CXCR3	AGTR1	P2RY2	GPR23	NTSR2	GPR92	ADRA1D	HTR2A	GPR37	ADRA1A	ADRB2	FSHR	PTGIR	F2RL2	CXCR4	EDNRB	CCR4	LTB4R	CCKAR	GHSR	P2RY6	OPRL1	ADRA2A	ADORA1	NPY1R	GPR85	HTR7	F2RL1	OPRD1	AGTRL1	HTR4	MTNR1A	NTSR1	PTGER2	HCRTR2	CCR2	IL8RA	PTGER4	ADRB3	MTNR1B	AGTR2	HRH1	HTR1F	PTGER1	NPY2R	CCRL1	RRH	HTR1E	GPR10	SREB3	CCRL2	CMKOR1	HRH3	GPR27	CX3CR1	ADORA2A	BCL9L	BDKRB2	OT7T022	GPR74	GPR30	BLR1	FPR1	C3AR1	OPRM1	C5R1	NPY6R	HTR1A	DRD1	TBXA2R	HTR1B	OR1F1	GPR4	P2RY1	PTGFR	ADRB1	DRD2	GPR44	NMU2R	CCKBR	PTGDR	TRHR	HCRTR1	FBXW2	HTR5A	RGR	GPR2	CCR1	PTAFR	ADORA2B
GPCRs_Class_A_Rhodopsin-like_2	GO	GPR18	GPR68	HM74	MGC29643	CYSLTR2	CYSLTR1	GPR161	GPR34	GPR45	GPR39	GPR75	P2RX4	H963
GPCRs_Class_B_Secretin-like	GO	CALCRL	SCTR	GIPR	GLP1R	ELTD1	LPHN1	CALCR	GLP2R	GCGR	VIPR1	ADCYAP1R1	GPR64	EMR1	CMKOR1	PTHR1	GHRHR	VIPR2	CD97	EMR2	PTHR2	LPHN3	CRHR1	LPHN2	CRHR2
GPCRs_Class_C_Metabotropic_glutamate_pheromone	GO	GABBR1	GRM1	GPRC5B	GRM5	CASR	RAI3	GRM3	GPRC5C	GPR51	GRM7	GPRC5D	GRM8	GRM4	GRM2
gsk3Pathway	BioCarta	WNT1	PRKR	RELA	AKT1	LBP	CD14	IRAK1	CCND1	PIK3R1	MYD88	APC	CTNNB1	TOLLIP	GNAI1	GSK3B	PDPK1	LEF1	TLR4	LY96	AXIN1	GJA1	FZD1	PIK3CA	NFKB1	DVL1	PPP2CA	TIRAP
gsPathway	BioCarta	ADCY1	GNGT1	GNAS	PRKACA	GNB1	PRKAR1A
hbxPathway	BioCarta	HBXIP	PTK2B	SOS1	HRAS	GRB2	CREB1	SRC	SHC1
hcmvPathway	BioCarta	MAP3K1	SP1	MAPK14	MAP2K3	MAP2K6	MAPK3	RELA	AKT1	PIK3CA	PIK3R1	MAP2K2	NFKB1	RB1	CREB1	MAPK1	MAP2K1
hdacPathway	BioCarta	IGF1R	CABIN1	MAPK14	PPP3CC	MAP2K6	AKT1	MEF2D	CALM1	INS	PIK3R1	AVP	INSR	YWHAH	SYT1	CALM2	NFATC2	PPP3CA	MYOD1	CALM3	PPP3CB	MEF2B	CAMK1	NFATC1	MEF2C	MAPK7	HDAC5	IGF1	PIK3CA	MEF2A	CAMK1G
hifPathway	BioCarta	EP300	COPS5	HSPCA	JUN	ARNT	VEGF	ASPH	HIF1A	VHL	NOS3	EDN1	EPO	CREB1	P4HB	LDHA
hivnefPathway	BioCarta	PSEN1	PSEN2	RELA	CASP6	CRADD	CASP3	CASP7	ADPRT	BAG4	BIRC2	CFLAR	MAP2K7	PRKDC	TNF	TRAF2	BIRC3	MAP3K1	BCL2	PTK2	CHUK	SPTAN1	NUMA1	MAP3K14	LMNB1	CYCS	MDM2	MAP3K5	TNFRSF6	DAXX	MAPK8	BID	CASP9	LMNB2	NFKBIA	TNFRSF1A	ARHGDIB	GSN	TNFRSF1B	BIRC4	RIPK1	CASP8	LMNA	RASA1	TRADD	ACTG1	FADD	CDC2L2	CDC2L1	PRKCD	DFFB	TRAF1	NFKB1	RB1	PAK2	CASP2	TNFSF6	DFFA	APAF1
hsp27Pathway	BioCarta	CASP9	TNF	BCL2	HSPB2	HSPB1	IL1A	ACTA1	CYCS	MAPKAPK3	CASP3	MAPKAPK2	TNFRSF6	DAXX	APAF1	FAS	FASLG
huntingtonPathway	BLACK	HD	HDAC1	CREB1	CREBBP
ifnaPathway	BioCarta	STAT1	ISGF3G	IFNAR2	STAT2	TYK2	IFNB1	IFNAR1	IFNA1	JAK1
ifngPathway	BLACK	STAT1	IFNG	JAK2	IFNGR2	IFNGR1	JAK1
igf1mtorPathway	BioCarta	EIF2S1	IGF1R	GSK3B	PDPK1	INPPL1	PDK2	EIF2S2	AKT1	FRAP1	EIF4E	IGF1	RPS6	PIK3CA	PIK3R1	EIF4EBP1	EIF2S3	PPP2CA	EIF2B5	RPS6KB1	PTEN
igf1Pathway	BioCarta	RAF1	IGF1R	RASA1	PTPN11	SRF	SOS1	GRB2	HRAS	JUN	MAPK3	IGF1	PIK3CA	PIK3R1	CSNK2A1	FOS	MAP2K1	SHC1	IRS1	ELK1	MAPK8
igf1rPathway	BioCarta	RAF1	IGF1R	SOS1	GRB2	HRAS	MAPK3	AKT1	PIK3CA	PIK3R1	BAD	YWHAH	MAPK1	MAP2K1	SHC1	IRS1
il10Pathway	BioCarta	TNF	STAT5A	BLVRA	IL10RA	IL1A	IL10RB	HMOX1	JAK1	STAT1	IL6	BLVRB	IL10	STAT3
Il12Pathway	BioCarta	CD3E	TRB@	IL12B	CD3Z	STAT4	IFNG	JAK2	IL12RB1	IL12RB2	MAPK14	TRA@	IL12A	TYK2	MAP2K6	JUN	IL18	CXCR3	CD3G	ETV5	CCR5	CD3D	MAPK8	IL18R1
il17Pathway	BioCarta	TRB@	CD3E	CSF3	CD3Z	KITLG	CD2	IL8	TRA@	CD4	CD58	IL3	CD34	IL17	CD3G	CD8A	CD3D	IL6
il18Pathway	BioCarta	IL18	IL2	IL12B	CASP1	IFNG	IL12A
il1rPathway	BioCarta	TGFB2	NFKBIA	MAP3K7	IRAK2	MAPK14	MAP2K6	IL1A	RELA	JUN	IRAK1	MAP3K7IP1	IKBKB	MYD88	TRAF6	IL1RAP	TOLLIP	TNF	SITPEC	MAP3K1	CHUK	IL1B	MAP2K3	IFNB1	MAP3K14	TGFB3	IL1RN	NFKB1	IL6	IL1R1	IRAK3	IFNA1	MAPK8	TGFB1
il22bpPathway	BioCarta	IL22RA2	STAT5A	JAK2	IL10RA	STAT5B	TYK2	SOCS3	JAK1	STAT1	JAK3	IL22	IL22RA1	STAT3
il2Pathway	BioCarta	RAF1	IL2	STAT5A	IL2RB	SOS1	GRB2	STAT5B	HRAS	LCK	JUN	MAPK3	IL2RG	JAK1	JAK3	CSNK2A1	FOS	MAP2K1	SHC1	SYK	ELK1	MAPK8	IL2RA
il2rbPathway	BioCarta	STAT5A	SOS1	MAPK3	IL2RG	AKT1	ZNFN1A3	SOCS3	PIK3R1	CFLAR	NMI	PPIA	SHC1	IRS1	SOCS1	IL2RA	RPS6KB1	MYC	RAF1	IL2RB	E2F1	BCL2	CBL	STAT5B	HRAS	GRB2	CRKL	JAK1	JAK3	PIK3CA	PTPN6	BAD	TNFRSF6	MAPK1	FOS	SYK	TNFSF6	BCL2L1
il3Pathway	BioCarta	RAF1	CSF2RB	STAT5A	JAK2	SOS1	GRB2	HRAS	STAT5B	IL3	MAPK3	IL3RA	PTPN6	FOS	MAP2K1	SHC1
il4Pathway	BioCarta	JAK3	GRB2	STAT6	IL4	SHC1	IL2RG	IRS1	AKT1	IL4R	RPS6KB1	JAK1
il5Pathway	BioCarta	HLA-DRA	CCL11	IL5	IL1B	CCR3	CD4	IL4	IL5RA	IL6	HLA-DRB1
il6Pathway	BioCarta	RAF1	CEBPB	PTPN11	SRF	JAK2	SOS1	GRB2	HRAS	JUN	MAPK3	JAK1	IL6ST	IL6R	JAK3	CSNK2A1	FOS	MAP2K1	SHC1	IL6	STAT3	ELK1
il7Pathway	BioCarta	EP300	STAT5A	BCL2	STAT5B	LCK	IL2RG	JAK1	JAK3	PIK3CA	PIK3R1	IL7R	PTK2B	IL7	NMI	FYN	CREBBP
Inflammatory_Response_Pathway	BioCarta	IL2	COL1A1	ZAP70	LAMB1	LCK	THBS3	LAMC2	IL4	IL2RG	FN1	LAMC1	CD86	IL5RA	IL4R	IL2RA	LAMA5	VTN	IL2RB	IFNG	IL5	COL1A2	MUC1	LAMB2	COL3A1	TNFSF5	CD80	CD28
inflamPathway	BioCarta	IL13	IL2	TGFB2	IL4	IL1A	IL15	CSF2	PDGFA	CSF1	HLA-DRB1	TNF	HLA-DRA	IL12B	CSF3	IFNG	IL5	IL8	IL12A	CD4	IFNB1	IL3	TGFB3	IL11	IL7	IL6	IFNA1	IL10	TGFB1	LTA
insulin_signalling	BioCarta	LNPEP	CSN2	DOK1	SLC2A4	LEP	PIK3R1	EIF4EBP1	HK2	PCK2	PRKCZ	IRS1	RPS6KB1	SERPINB6	ARAF1	GSK3B	AKT2	PDPK1	IGFBP1	MKNK1	GRB2	HRAS	TIEG	PIK3CA	PKLR	PTPRF	UCP2	MAP2K2	PIK3R3	BCL2L1	ACACB	PRKCB1	AEBP1	CRK	GAB1	AKT1	FRAP1	SOS2	INS	AKT3	INSR	GSK3A	PIK3CB	MAP2K1	PPIA	UCP1	RAF1	GCK	CBL	RETN	PRKCG	CAP1	SLC2A1	G6PD	G6PC	GCG	SLC27A4	PRKCI	NOS2A	PPARG	ACOX1	ADRB3	DUSP14	SERPINE1	SHC3	SREBF1	SORBS1	VEGF	RRAS	RPS6KA1	FBP1	PIK3R2	EIF2B1	PTPN11	RRAS2	SOS1	ACACA	JUN	RPL13A	EIF4E	NPY	BRD4	PTPN1	NCK1	DF	CEBPA	SHC1	PRL	CEBPB	KRAS2	ERCC1	PKM2	TG	BRAF	IRS4	GAPD	PPP1CA	IRS2	ORM1	MAPK1	FOS	NCK2	ACTB	LDLR
insulinPathway	BioCarta	RAF1	RASA1	PTPN11	SRF	SLC2A4	SOS1	GRB2	HRAS	JUN	MAPK3	INS	PIK3CA	PIK3R1	CSNK2A1	INSR	FOS	MAP2K1	SHC1	IRS1	ELK1	MAPK8
integrinPathway	BioCarta	SOS1	BCAR1	PXN	MAPK3	JUN	CSK	ACTN1	ITGB1	CAPN1	MAP2K1	SHC1	BCR	RAF1	RAP1A	ACTN3	PTK2	ACTN2	GRB2	HRAS	CRKL	PPP1R12B	VCL	ACTA1	ZYX	TNS	ROCK1	CAV1	CAPNS1	MAP2K2	TLN1	MAPK1	SRC	ITGA1	FYN	GRF2	CAPNS2	MAPK8	ARHA
intrinsicPathway	BioCarta	FGG	SERPINC1	F5	COL4A1	COL4A5	F8	F2R	FGA	COL4A4	F11	KLKB1	F2	COL4A3	PROC	KNG	COL4A6	F10	SERPING1	COL4A2	PROS1	F9	F12	FGB
ionPathway	BioCarta	P2RY2	PLCG1	PTK2B	PRKCA	PRKCB1
keratinocytePathway	BioCarta	EGFR	NFKBIA	SP1	PRKCB1	TNFRSF1A	MAPK14	MAP2K6	RELA	JUN	MAPK3	TNFRSF1B	PRKCH	IKBKB	RIPK1	CEBPA	MAP2K1	PRKCE	ETS2	MAP2K7	PRKCQ	ETS1	RAF1	MAPK13	TNF	MAP2K4	TRAF2	MAP3K1	BCL2	CHUK	EGF	PRKCA	HRAS	MAP2K3	PRKCG	MAP3K14	HOXA7	MAP3K5	PRKCD	NFKB1	TNFRSF6	MAPK1	PPP2CA	DAXX	FOS	TNFSF6	MAPK8
ketonebodiesPathway	BLACK	HMGCS2	ACAT1	HMGCL	BDH
krebPathway	BioCarta	ACO2	SUCLA2	MDH1	FH	CS	IDH2	SDHA	OGDH
Krebs-TCA_Cycle	BioCarta	PDK4	MDH1	DLAT	PDK2	IDH2	PDHA1	KIAA1348	PDHB	SDHB	PPM2C	IDH3A	FH	PDK3	DLST	DLD	ACO2	PDK1	PDHA2	MDH2	SUCLG1	PDHX	CS	SDHA	IDH3B	OGDH	PC	SDHD	SDHC	IDH3G
lairPathway	BioCarta	TNF	SELP	C5	IL8	C3	IL1A	SELPLG	ITGA4	ITGB1	VCAM1	C7	ICAM1	BDK	ITGB2	ITGAL	IL6	C6
ldlPathway	BioCarta	CCL2	CSF1	ACAT1	LPL	IL6	LDLR
lechtinPathway	BioCarta	MBL2	C2	MASP2	C5	C7	C8A	C3	C4B	MASP1	C4A	C9	C6
leptinPathway	BioCarta	LEPR	PRKAB1	CPT1A	LEP	PRKAG1	PRKAA1	ACACA	PRKAB2	PRKAA2	PRKAG2
longevityPathway	BioCarta	IGF1R	SOD3	CAT	GHR	HRAS	SOD2	GH1	AKT1	IGF1	SOD1	PIK3CA	PIK3R1	SHC1	FOXO3A
lymphocytePathway	BioCarta	ITGB1	ITGA4	SELL	ICAM1	CD44	ITGAL	ITGB2	PECAM1	SELE
malatePathway	BLACK	MDH1	GOT1	SLC25A11	SLC1A3
malatexPathway	BioCarta	SLC25A1	ACLY	MDH1	PC	ME1	CS	SLC25A11	PDHA1
MAP_kinase_activity	GenMAPP	MAPK13	MAPK4	MAPK12	MAPK1	MAPK14	MAPK7	MAPK3	MAPK11
MAP_kinase_kinase_activity	GenMAPP	MAPK10	MAP2K3	MAPK14	MAP2K1	MAP2K6	MAP2K7	MAPKAPK5	MAPKAPK3
MAP00010_Glycolysis_Gluconeogenesis	GenMAPP	PFKM	DLAT	PGK1	PFKL	PDHA1	ALDH3A2	PDHB	ENO1	PRO1073	ENO2	HK2	ALDH1B1	DLD	LDHA	BPGM	HK1	PDHA2	ALDH2	PFKP	ADH6	LDHC	ALDH3B2	PKLR	HK3	GRCC9	ADH7	ACYP1	ALDOC	BID	FBP1	FBP2	ADH1A	ALDOB	PGAM1	ALDOA	LDHB	ENO3	ADH5	ALDH3B1	ALDH1A3	ADH4	GCK	PKM2	TPI1	FMNL3	ADH1B	ACYP2	ALDH1A1	GAPD	ALDH3A1	PGM1	GPI	ADH1C	G6PC	PGAM2
MAP00020_Citrate_cycle_TCA_cycle	GenMAPP	ACO2	MDH1	MDH2	CS	ACO1	IDH2	SDHA	SDHB	OGDH	ACLY	IDH1	PC	IDH3A	PCK1	FH	DLST	IDH3G	DLD
MAP00030_Pentose_phosphate_pathway	GenMAPP	PFKM	FBP2	RBSK	ALDOB	PFKP	PFKL	TALDO1	PRPS1	FMNL3	ALDOA	G6PD	PRO1073	PGM1	GPI	PRPS2	H6PD	ALDOC	PGD	FBP1
MAP00051_Fructose_and_mannose_metabolism	GenMAPP	PFKM	FBP2	ALDOB	PFKL	KHK	ALDOA	GMPPB	PFKFB1	SORD	PMM1	HK2	FPGT	HK1	GCK	MPI	PFKP	TPI1	FMNL3	PMM2	HK3	GRCC9	AKR1B1	ALDOC	GMPPA	FBP1
MAP00052_Galactose_metabolism	GenMAPP	PFKM	GALK1	GALE	GLB1	GCK	HK1	UGP2	MGAM	PFKP	GALK2	PFKL	FMNL3	B4GALT2	GALT	HK3	PGM1	AKR1B1	B4GALT1	G6PC	HK2	LCT	GAA	LALBA	GLA
MAP00062_Fatty_acid_biosynthesis_path_2	GenMAPP	ACAA2	HADHB	EHHADH	ACAT1	ECHS1	ACAA1	HADHA
MAP00071_Fatty_acid_metabolism	GenMAPP	CYP4A11	CYP2B6	ALDH3A2	FACL4	HADHA	CYP2E1	CYP2C18	CYP19A1	ACOX1	CPT1A	CPT2	ALDH1B1	ACADS	FACL2	ALDH2	ACADM	ADH6	CYP2J2	CYP3A5	CYP51A1	ADH7	FACL5	CYP2D6	CYP4B1	ACADL	ADH1A	HADHB	CDK3	GCDH	CYP3A4	EHHADH	ACAT1	CYP1A2	ADH5	CYP1A1	ADH4	ACAA2	CYP4F8	ECHS1	ADH1B	ALDH1A1	CYP2C8	ADH1C	CYP2F1	CYP2A7	FACL3	CYP2A6	ACAA1	CYP2C9	CYP3A7
MAP00100_Sterol_biosynthesis	GenMAPP	MVK	NQO2	SC5DL	IDI1	LSS	HMGCR	FDFT1	FDPS	SQLE	MVD
MAP00120_Bile_acid_biosynthesis	GenMAPP	ADH4	ACAA2	ADH1A	HADHB	ALDH2	CYP7A1	CYP27A1	BAAT	ADH1B	ALDH3A2	ADH6	ALDH1A1	SRD5A1	SOAT1	AKR1D1	ADH7	CEL	LIPA	ADH1C	ADH5	SRD5A2	ALDH1B1	ACAA1
MAP00140_C21_Steroid_hormone_metabolism	GenMAPP	HSD3B1	CYP11A1	CYP11B2	HSD3B2	HSD11B1	CYP21A2	CYP17A1	HSD11B2	CYP11B1	AKR1D1
MAP00150_Androgen_and_estrogen_metabolism	GenMAPP	STS	HSD3B1	CYP11B2	ARSE	HSD3B2	STE	ADH6	UGT2B15	SRD5A1	AKR1D1	CYP11B1	HSD17B2	ARSD	UGT2B4	HSD11B1	SRD5A2	HSD17B3	HSD11B2
MAP00190_Oxidative_phosphorylation	GenMAPP	ATP6V1B2	ATP6V0A1	ATP6V1G2	UQCRFS1	ATP4B	ZNF183	NDUFS1	ATP4A	ATP7A	ATP6V0A4	COX6C	SDHB	ATP6V0B	ATP6V0E	UQCRC2	COX4I1	COX7C	COX6A1	ATP7B	ATP6V1A	COX5A	ATP12A	UQCRB	COX6A2	ATP6V1F	ATP6V1G1	COX7A2	NFKBIL2	ATP6V1B1	COX5B	SDHA	COX7A1	MPP5	ATP6AP1	ATP6V0D1	COX7B	NDUFA5	NDUFV2	ATP6V1D	COX6B	ATP6V0C	UQCRC1	ATP5E	ATP6V1E1	ATP6V1C1	ATP6V1G3
MAP00193_ATP_synthesis	GenMAPP	ATP6V1G1	ATP6V0A1	ATP6V1B2	ATP6V1G2	ATP6V1B1	MPP5	ATP6V0A4	ATP6AP1	ATP6V0D1	ATP6V0B	ATP6V0E	ATP6V1D	ATP6V0C	ATP6V1E1	ATP5E	ATP6V1C1	ATP6V1A	ATP6V1F	ATP6V1G3
MAP00195_Photosynthesis	GenMAPP	ATP6V1G1	ATP6V0A1	ATP6V1B2	ATP6V1G2	ATP6V1B1	MPP5	ATP6V0A4	ATP6AP1	ATP6V0D1	ATP6V0B	FDXR	ATP6V0E	ATP6V1D	ATP6V0C	ATP6V1E1	ATP5E	ATP6V1C1	ATP6V1A	ATP6V1F	ATP6V1G3
MAP00220_Urea_cycle_and_metabolism_of_amino_groups	GenMAPP	ASL	PYCS	CPS1	ACY1	OTC	ASS	CKM	OAT	ARG2	PYCR1	GAMT	CKMT2	SMS	GLUD1	ARG1	VTI1B	ODC1	CKMT1	CKB
MAP00230_Purine_metabolism	GenMAPP	ADSS	POLE	POLR2E	GMPS	ADCY7	POLR2J2	ECGF1	NPR2	NME1	PDE1A	ATP5J	ADCY6	ADA	PDE4A	POLB	GDA	NT5C1B	NP	GUCY2D	POLD2	POLR1B	IMPDH1	IGFBP7	ADCY9	DGUOK	APRT	POLD1	XDH	PFAS	AMPD2	GUCY2F	HPRT1	PDE4B	POLR2D	RRM1	NPR1	POLA	POLR2I	ADK	PKLR	RRM2	DCK	PRPS2	POLR2F	PPAT	GUCY1A2	POLR2K	PDE6G	POLR2G	AMPD1	POLG	POLR2L	POLR2H	ADSL	PDE6C	ATIC	GUCY2C	AMPD3	PDE5A	NME2	POLR2C	ADCY1	POLR2B	PDE4C	POLR2J	GUCY1A3	PKM2	PDE4D	PRPS1	POLR2A	PDE6B	PAICS	POLRMT	ADCY3	AK1	ADCY2	GMPR	GUCY1B3	AK2	FHIT	GART	DOK4	IMPDH2	ADCY8
MAP00240_Pyrimidine_metabolism	GenMAPP	POLE	POLR2E	UMPK	POLR2L	POLR2J2	DUT	POLR2H	ECGF1	NME1	UMPS	POLB	NT5C1B	NME2	POLR2C	NP	POLD2	POLR1B	IGFBP7	CTPS	POLR2B	TYMS	CAD	UBTF	POLD1	POLR2J	DHODH	POLR2D	RRM1	POLR2A	AK3	POLA	POLR2I	POLRMT	DCTD	RRM2	DCK	POLR2F	DPYD	CDA	TK1	POLR2K	DPYS	POLR2G	POLG	DOK4
MAP00251_Glutamate_metabolism	GenMAPP	ALDH5A1	GMPS	GAD2	GCLC	GOT1	GA	GSS	CPS1	GSR	QARS	GAD1	ABAT	GOT2	GFPT1	GPT	EPRS	PPAT	GLUD1	GLUL	CAD	GCLM
MAP00252_Alanine_and_aspartate_metabolism	GenMAPP	ADSS	DARS	ASL	AGXT	GAD2	GOT1	ADSL	ASPA	AARS	GAD1	ASS	ABAT	GOT2	NARS	GPT	DDX3X	PC	CRAT	DDO	ASNS	CAD
MAP00260_Glycine_serine_and_threonine_metabolism	GenMAPP	SHMT1	AGXT	PISD	ALAS1	GARS	SHMT2	LOC56901	AOC3	GLDC	CBS	AMT	AOC2	GAMT	SDS	KIAA0335	MAOA	HBG2	SARS	ABP1	TARS	MAOB	BHMT	DAO	DLD
MAP00271_Methionine_metabolism	GenMAPP	CBS	MAT1A	CTH	DNMT1	AHCY	MTR	MARS	BHMT
MAP00272_Cysteine_metabolism	GenMAPP	CARS	CTH	GOT1	SDS	LDHB	MPST	LDHC	GOT2	LDHA
MAP00280_Valine_leucine_and_isoleucine_degradation	GenMAPP	HADHB	PCCA	MCCC1	ALDH3A2	PCCB	HADHA	BCKDHB	EHHADH	AOX1	ALDH1B1	HMGCS1	ACADS	C14orf45	HMGCS2	ACAA2	BCKDHA	ALDH2	MCCC2	ALDH6A1	ACADM	ECHS1	IVD	HMGCL	ALDH1A1	MUT	OXCT	ACAA1
MAP00310_Lysine_degradation	GenMAPP	SHMT1	ALDH2	SHMT2	ECHS1	AASS	LOC56901	ALDH3A2	ALDH1A1	HADHA	BBOX1	OGDH	GCDH	EHHADH	ACAT1	PLOD	ALDH1B1	DLST
MAP00330_Arginine_and_proline_metabolism	GenMAPP	ASL	NOS2A	ALDH3A2	ASS	AMD1	GOT2	OAT	ARG2	NOS3	EPRS	RARS	GLUD1	ALDH1B1	VTI1B	MAOB	CKMT1	SAT	GOT1	ALDH2	CPS1	OTC	ALDH1A1	AOC3	CKM	AOC2	PYCR1	GAMT	CKMT2	SMS	MAOA	ARG1	ABP1	AGMAT	P4HA1	NOS1	ODC1	P4HB	CKB	DAO
MAP00340_Histidine_metabolism	GenMAPP	ALDH2	HARSL	ASPA	HDC	ALDH3A2	AOC3	ALDH1A1	DDC	ALDH3B2	AOC2	HAL	ALDH3A1	MAOA	ALDH1B1	ABP1	ALDH3B1	HNMT	ALDH1A3	MAOB	HARS
MAP00350_Tyrosine_metabolism	GenMAPP	TAT	COMT	DBH	ADH1A	HPD	ARVCF	DDC	GOT2	HGD	AOX1	ADH5	ALDH3B1	ALDH1A3	MAOB	TH	FAH	PNMT	ADH4	GOT1	ADH1B	ADH6	AOC3	ALDH3A1	AOC2	ALDH3B2	ADH7	MAOA	ADH1C	ABP1	TYR
MAP00360_Phenylalanine_metabolism	GenMAPP	TAT	HPD	GOT1	LPO	AOC3	DDC	GOT2	ALDH3B2	AOC2	ALDH3A1	MAOA	MPO	ABP1	ALDH3B1	ALDH1A3	MAOB
MAP00361_gamma_Hexachlorocyclohexane_degradation	GenMAPP	CYP2B6	ALPL	CYP2E1	CYP2C18	CYP3A4	CYP19A1	ACP5	CYP1A2	ACPP	CYP1A1	CYP4F8	ACP2	CYP2J2	CYP3A5	ALPP	PON1	CYP51A1	ACP1	ALPPL2	CYP2C8	CYP2A7	CYP2F1	CYP2A6	CYP2D6	ACPT	ALPI	CYP4B1	CYP3A7	CYP2C9
MAP00380_Tryptophan_metabolism	GenMAPP	ACMSD	CYP2B6	ALDH3A2	CYP2E1	DDC	HADHA	CYP2C18	CYP3A4	GCDH	CYP19A1	EHHADH	ACAT1	CYP1A2	AOX1	ALDH1B1	WARS	MAOB	TDO2	CYP1A1	KYNU	CAT	ALDH2	CYP4F8	AANAT	ECHS1	HAAO	CYP3A5	AOC3	CYP2J2	ALDH1A1	OGDH	CYP51A1	AOC2	CYP2C8	MAOA	CYP2A7	CYP2F1	CYP2A6	ABP1	CYP2D6	CYP4B1	WARS2	ASMT	CYP3A7	CYP2C9	INDO
MAP00400_Phenylalanine_tyrosine_and_tryptophan_biosynthesis	GenMAPP	TAT	PAH	ENO2	GOT1	ENO3	BID	GOT2	ENO1
MAP00410_beta_Alanine_metabolism	GenMAPP	GAD2	ALDH2	ACADM	ECHS1	ALDH3A2	GAD1	AOC3	ALDH1A1	HADHA	ABAT	AOC2	SMS	EHHADH	DPYD	ALDH1B1	ABP1	DPYS
MAP00430_Taurine_and_hypotaurine_metabolism	GenMAPP	GAD2	GAD1	BAAT	GGT1
MAP00450_Selenoamino_acid_metabolism	GenMAPP	CBS	MAT1A	CTH	AHCY	MARS	GGT1
MAP00460_Cyanoamino_acid_metabolism	GenMAPP	SHMT1	SHMT2	LOC56901	GGT1
MAP00480_Glutathione_metabolism	GenMAPP	GSTM2	GPX3	GSTT1	MGST1	GCLC	GSTP1	GSS	GSR	IDH2	GPX4	GGT1	GPX1	GSTM1	G6PD	IDH1	GSTA2	GSTM5	GSTM3	GSTT2	GPX2	GSTM4	GCLM
MAP00500_Starch_and_sucrose_metabolism	GenMAPP	AGL	PYGM	GCK	HK1	MGAM	UGP2	PYGB	ADH6	AMY1A	UGT2B15	PYGL	GYS2	PRO1073	GUSB	HK3	PGM1	GPI	G6PC	HK2	GYS1	UGT2B4	GBE1	GAA
MAP00510_N_Glycans_biosynthesis	GenMAPP	DDOST	ALG5	GCS1	B4GALT3	MGAT1	B4GALT2	MAN2A1	DPAGT1	B4GALT5	MGAT2	DPM1	SIAT6	SIAT1	B4GALT1	FUT8	MGAT3	PPOX	FLJ21924
MAP00512_O_Glycans_biosynthesis	GenMAPP	GALNT2	SIAT4A	GALNT8	GALNT7	GALNT9	TUWD12	GALNT1	GCNT1	GALNT3	GALNT6
MAP00530_Aminosugars_metabolism	GenMAPP	GCK	HK1	HEXA	DIA1	CMAS	PGM3	GNE	HEXB	GFPT1	RENBP	PGM1	HK3	HK2	NAGLU
MAP00531_Glycosaminoglycan_degradation	GenMAPP	GLB1	GALNS	GUSB	HEXA	ARSB	IDS	IDUA	GNS	NAGLU	HEXB
MAP00532_Chondroitin_Heparan_sulfate_biosynthesis	GenMAPP	HS3ST3A1	B3GAT3	HS3ST2	HS3ST1	B4GALT7	XYLT2	HS3ST3B1
MAP00533_Keratan_sulfate_biosynthesis	GenMAPP	B4GALT5	SIAT6	SIAT1	B4GALT1	B4GALT3	FUT8	B4GALT2	PPOX
MAP00561_Glycerolipid_metabolism	GenMAPP	DGAT1	ALDH3A2	SERPINB1	PNLIPRP1	CPT1A	CPT2	ACHE	GPD1	PNLIPRP2	ALDH1B1	EKI1	GLA	PLA2G1B	ALDH2	PLA2G4A	ADH6	PLA2G2A	ALPPL2	ADH7	GRCC9	DGKQ	PLA2G5	ALPI	CHAT	PCYT1A	GPD2	PNLIP	PISD	CHK	ADH1A	ALPL	PAFAH1B1	DGKG	ADH5	DGKA	GLB1	ADH4	LIPC	GK	TPI1	ADH1B	ALDH1A1	ALPP	AKR1B1	CEL	ADH1C	PAFAH2	AGPS	DGKE	LPL
MAP00562_Inositol_phosphate_metabolism	GenMAPP	PIK3C2G	PIK4CA	PLCB2	INPP4B	PIP5K2B	INPPL1	PIK3C2A	INPP4A	PLCD1	IMPA1	PIK3C2B	PIK3CA	PLCG2	PLCG1	INPP1	ITPKA	PIK3CB	ALDRL6	ITPKB	PIK3CG
MAP00590_Prostaglandin_and_leukotriene_metabolism	GenMAPP	CBR3	PTGDS	PTGS2	PLA2G1B	PGDS	LTA4H	ALOX12	PLA2G4A	PTGIS	GGT1	ALOX15	PLA2G2A	TBXAS1	CYP4F3	ALOX5	PLA2G5	PTGS1	CBR1	CYP4F2
MAP00600_Sphingoglycolipid_metabolism	GenMAPP	GLB1	CST	NEU1	HEXA	UGCG	GBA	ARSE	HEXB	ASAH1	ARSA	ARSD	B3GALT4	GALGT	GLA
MAP00601_Blood_group_glycolipid_biosynthesis_lact_series	GenMAPP	FUT2	ABO	FUT6	FUT1	FUT5	FUT3
MAP00602_Blood_group_glycolipid_biosynthesis_neolact_series	GenMAPP	FUT2	B4GALT3	FUT6	B4GALT2	FUT5	B4GALT5	B3GNT1	GCNT2	ABO	SIAT1	B4GALT1	FUT1	PPOX	FUT3
MAP00603_Globoside_metabolism	GenMAPP	FS	SIAT4A	FUT2	HEXA	FUT6	GLA	FUT1	NAGA	HEXB	FUT5	FUT3
MAP00620_Pyruvate_metabolism	GenMAPP	ACACB	MDH1	DLAT	GLO1	PDHA1	ACACA	ALDH3A2	PDHB	ME3	LDHB	ACAT1	ADH5	ALDH1B1	HAGH	GRHPR	LDHA	DLD	PDHA2	ME1	PKM2	MDH2	ALDH2	ACYP2	ALDH1A1	LDHC	PKLR	AKR1B1	PC	PCK1	ACYP1	ME2
MAP00630_Glyoxylate_and_dicarboxylate_metabolism	GenMAPP	HAO2	ACO2	MDH1	MDH2	MTHFD2	HAO1	CS	ACO1	MTHFD1	GRHPR
MAP00632_Benzoate_degradation	GenMAPP	GCDH	EHHADH	ACAT1	ACYP1	ECHS1	ACYP2	HADHA
MAP00640_Propanoate_metabolism	GenMAPP	C14orf45	ACACB	PCCA	ALDH2	ALDH6A1	ACADM	ECHS1	ACACA	PCCB	ALDH3A2	ALDH1A1	MUT	LDHC	HADHA	ABAT	EHHADH	ACAT1	LDHB	ALDH1B1	LDHA
MAP00650_Butanoate_metabolism	GenMAPP	ALDH5A1	HMGCS2	PDHA2	GAD2	ALDH2	ECHS1	PDHA1	HMGCL	ALDH3A2	GAD1	ALDH1A1	PDHB	HADHA	BDH	ABAT	OXCT	EHHADH	ACAT1	ALDH1B1	HMGCS1	ACADS
MAP00670_One_carbon_pool_by_folate	GenMAPP	SHMT1	AMT	DHFR	FTHFD	MTR	SHMT2	ATIC	MTHFD2	MTHFD1	TYMS	LOC56901	GART
MAP00680_Methane_metabolism	GenMAPP	SHMT1	CAT	MPO	SHMT2	LPO	ADH5	LOC56901
MAP00710_Carbon_fixation	GenMAPP	FBP2	MDH1	PKM2	ME1	ALDOB	GOT1	MDH2	PGK1	TPI1	GOT2	ALDOA	PKLR	GPT	GRCC9	ME3	ALDOC	FBP1
MAP00720_Reductive_carboxylate_cycle_CO2_fixation	GenMAPP	ACO2	IDH1	MDH1	MDH2	FH	ACO1	IDH2
MAP00740_Riboflavin_metabolism	BLACK	ACP1	ACP5	ACP2	ACPP	ACPT	TYR
MAP00760_Nicotinate_and_nicotinamide_metabolism	BLACK	NT5C1B	NP	NMNAT1	NNMT	AOX1	QPRT
MAP00790_Folate_biosynthesis	GenMAPP	ALPPL2	DHFR	FPGS	PTS	QDPR	ALPL	ALPI	MTHFD1	TYMS	GGH	GCH1	ALPP
MAP00860_Porphyrin_and_chlorophyll_metabolism	GenMAPP	CPO	HMBS	BLVRA	PYCS	ALAD	ADH6	UGT2B15	HMOX1	FDXR	GUSB	CP	EPRS	HMOX2	UGT2B4	UROS	UROD	FECH	HCCS	BLVRB
MAP00910_Nitrogen_metabolism	GenMAPP	CA12	CA4	CTH	CA5A	GA	CPS1	CA9	CA5B	CA1	CA14	CA8	ANKRD1	AMT	CA7	HAL	DDX3X	CA6	GLUD1	CA2	CA3	GLUL	ASNS
MAP00970_Aminoacyl_tRNA_biosynthesis	GenMAPP	KARS	DARS	GARS	HARSL	AARS	QARS	NARS	CARS	RARS	EPRS	KIAA0335	HBG2	SARS	MARS	TARS	IARS	WARS2	WARS	HARS
MAP03020_RNA_polymerase	GenMAPP	POLR2E	POLR2L	POLR2J2	POLR2H	POLR2D	POLR2A	POLRMT	POLR2I	POLR2C	POLR1B	POLR2F	IGFBP7	POLR2K	POLR2B	POLR2G	DOK4	POLR2J
MAP03070_Type_III_secretion_system	GenMAPP	ATP6V1G1	ATP6V0A1	ATP6V1B2	ATP6V1G2	ATP6V1B1	MPP5	ATP6V0A4	ATP6AP1	ATP6V0D1	ATP6V0B	ATP6V0E	ATP6V1D	ATP6V0C	ATP6V1E1	ATP5E	ATP6V1C1	ATP6V1A	ATP6V1F	ATP6V1G3
MAPK_Cascade	GO	RAF1	ARAF1	MAP2K4	MAP3K1	NRAS	MAP2K3	MAPK14	D1S155E	MAP3K3	BRAF	MAP2K6	MAP3K2	MAPK3	JUN	MAP2	MBP	MAPK10	RRAS	MAPK1	MAP2K1	ELK1	PLCB3	MAP2K7
MAPKKK_cascade	GO	MAP3K5	DUSP4	FGFR3	MAPKAPK2	NRTN	DUSP7	MAP3K3	DUSP6	FGFR1
mapkPathway	BioCarta	MAPK6	MAP3K10	TGFB2	MAP3K7	MAPK14	RPS6KA3	MAP2K6	RELA	RPS6KA4	ATF2	MEF2D	MAPK11	MAP3K13	MAP4K1	MAP3K8	RPS6KA2	MAP3K11	TGFBR1	MAP2K7	RPS6KB1	MYC	MAPK13	MEF2B	ARAF1	TRAF2	MAP3K1	MKNK1	RPS6KB2	CHUK	GRB2	HRAS	MAPK7	MAP3K14	MAP4K3	TGFB3	MKNK2	MAP3K5	MAP2K2	MAPK10	MEF2A	RPS6KA1	DAXX	TGFB1	MAPK8	MAX	NFKBIA	SP1	RAC1	MAP3K3	MAP3K6	JUN	MAPK3	MAP4K5	PDZGEF1	MAPK4	IKBKB	PAK1	MAP4K4	RIPK1	CEBPA	MAP2K1	SHC1	MAPKAPK5	RAF1	MAP2K4	MAP4K2	TRADD	MAPK12	MEF2C	MAP2K3	BRAF	MAP3K2	MAPK9	MAP3K9	MAPKAPK3	STAT1	MAP3K4	RPS6KA5	NFKB1	MAPKAPK2	CREB1	MAP3K12	MAPK1	PAK2	FOS	MAP2K5	ELK1
Matrix_Metalloproteinases	BioCarta	MMP3	MMP10	MMP28	TIMP4	MMP13	MMP27	MMP16	TIMP3	MMP9	MMP19	MMP20	MMP7	TIMP1	MMP2	MMP25	MMP8	TNF	MMP17	MMP11	BSG	MMP24	MMP12	TIMP2	MMP26	MMP15	MMP14
mcalpainPathway	BioCarta	PRKAR2A	EGFR	VIL2	PRKAR2B	PXN	MAPK3	PRKAR1A	MYL2	CAPN1	ITGB1	PRKACG	MYLK	CXCR3	CAPN2	PRKACB	PTK2	EGF	HRAS	ACTA1	PRKAR1B	CAPNS1	TLN1	MAPK1	ITGA1	CAPNS2
mef2dPathway	BioCarta	TRB@	CALM3	PPP3CB	EP300	NFATC1	CABIN1	PRKCB1	PRKCA	TRA@	PPP3CC	MEF2D	HDAC2	CALM1	CAPNS1	HDAC1	SYT1	CAPN2	CALM2	NFATC2	CAPNS2	PPP3CA
methioninePathway	BLACK	BCKDHB	CBS	BCKDK	CTH	MUT
metPathway	BioCarta	PTPN11	SOS1	RAP1B	GAB1	CRK	PXN	HGF	MAPK3	JUN	MET	MAP4K1	ITGB1	PIK3R1	PAK1	MAP2K1	STAT3	RAF1	RAP1A	RASA1	PTK2	GRB2	HRAS	CRKL	ACTA1	DOCK1	PIK3CA	PTK2B	MAP2K2	MAPK1	SRC	FOS	ITGA1	GRF2	ELK1	MAPK8	PTEN
mitochondriaPathway	BioCarta	BIK	CASP9	BIRC3	BCL2	CASP6	BAK1	CYCS	DFFB	ENDOG	CASP7	CASP3	BIRC4	BAX	PDCD8	BIRC2	CASP8	BCL2L1	DFFA	DIABLO	BID	APAF1
mitrPathway	BioCarta	MEF2B	CAMK1	MEF2C	MEF2A	YWHAH	HDAC9	CAMK1G	MEF2D	MYOD1
monocytePathway	BioCarta	ITGB1	ITGA4	SELL	SELP	ICAM1	CD44	ITGAL	ITGB2	ITGAM	PECAM1	SELE
mprPathway	BioCarta	GNAI1	PRKAR2A	PRKACB	GNGT1	HRAS	PRKAR2B	CAP1	ACTA1	MAPK3	PRKAR1A	CDC25C	CDC2	ADCY1	PRKACG	PIN1	PRKAR1B	CCNB1	GNAS	MAPK1	RPS6KA1	SRC	GNB1	MYT1
mRNA_binding_activity	BioCarta	EIF4A1	HNRPAB	KHDRBS1	SLBP	SSB	FMR1	RPL35	ELAVL1	GRSF1
mRNA_processing	BioCarta	SF3B4	SFRS4	SFRS7	SFRS2IP	SFPQ	U2AF1	PRPF8	HNRPA1	SLBP	NONO	SFRS11	SFRS1	CUGBP1	SMNDC1	U2AF2	SF3A1	SLU7	CPSF6	SIP1	USP39	SNRP70	PRPF3	SFRS9	CPSF5	PRPF18	SFRS8	LSM5	SNRPB2	ELAVL4	MGC12538	SF3A3	KHSRP	KHDRBS1	SF3B3	HNRPR	HNRPA0	LSM3	PTBP1	SFRS10	SFRS2	SPF45	FUSIP1	U5-116KD	SPOP	SFRS5	LSM1	DHX15
mRNA_splicing	BioCarta	SF3B4	SNRPD1	SNRPG	DDX23	SFPQ	SFRS2IP	HPRP8BP	SFRS11	SNRPF	SMNDC1	SF3A1	USP39	SNRP70	IVNS1ABP	MGC12538	SF3A3	KHSRP	SNRPC	SNRPB	SNRPD2	SNRPD3	CDC40	SNRPA1	NOL3	SFRS4	SFRS7	MPHOSPH10	LSM4	U2AF1	PRPF8	NONO	LOC283849	PRPF3	U2AF1L2	LSM6	PRPF18	SNRPN	FLJ20511	SRP19	SNRPB2	PRPF4	NCBP1	SF3B3	HNRPC	SF3A2	PPIG	FMNL3	SRRM1	NP220	FNBP3	PTBP1	SFRS10	SFRS2	SPF45	U5-116KD	DIM1	LSM1	PPAN
mrpPathway	BioCarta	ABCC3	ABCB11	GSTP1	ABCB1	ABCC1	ABCB4
mspPathway	BioCarta	TNF	MST1	CCL2	CSF1	IL1B	MST1R
mta3Pathway	BioCarta	TUBA6	ESR1	GREB1	TUBA2	MTA3	HSPB2	HSPB1	PDZK1	TUBA3	ALDOA	GAPD	TUBA4	TUBA8	MTA1	CTSD	TUBA1
mtorPathway	BioCarta	EIF4G2	TSC1	PDPK1	MKNK1	EIF4B	PDK2	TSC2	EIF3S10	FKBP1A	AKT1	EIF4G1	FRAP1	EIF4E	EIF4A1	RPS6	PIK3CA	PIK3R1	EIF4EBP1	EIF4G3	PPP2CA	EIF4A2	RPS6KB1	PTEN
muscle_myosin	BioCarta	MYH7	MYH1	MYO1A	MYL3	MYL6	MYH4	MYH11	MRCL3	MYL1	MYL5	MYH8	MYL9	MYH6	MYL4	HUMMLC2B
myosinPathway	BioCarta	GNAQ	GNGT1	PRKCB1	PRKCA	PPP1R12B	GNA12	PRKCL1	PLCB1	ARHGEF1	MYL2	ROCK1	GNA13	MYLK	GNB1	ARHGAP5
ndkDynaminPathway	BioCarta	CALM3	PPP3CB	DNM1	EPN1	AP2A1	PPP3CC	NME1	AP2M1	AMPH	EPS15	CALM1	NME2	SYNJ2	SYT1	CALM2	SYNJ1	PICALM	PPP3CA	BIN1
neurotransmittersPathway	BLACK	PNMT	DBH	TPH1	HDC	GAD1	TH
neutrophilPathway	BioCarta	SELL	ICAM1	CD44	ITGAL	ITGB2	ITGAM	PECAM1	SELE
nfatPathway	BioCarta	MAPK14	CALM1	PRKACG	NFATC3	PIK3R1	EDN1	SYT1	NFATC2	RPS6KB1	CALM3	NFATC1	GSK3B	PRKACB	CTF1	HRAS	ACTA1	IGF1	PIK3CA	PRKAR1B	CAMK1G	MAPK8	CREBBP	PRKAR2A	CALR	LIF	PPP3CC	HAND1	PRKAR2B	NKX2-5	MAPK3	FKBP1A	PRKAR1A	AKT1	F2	FGF2	HAND2	MAP2K1	CALM2	NPPA	PPP3CA	RAF1	PPP3CB	CAMK1	AGT	MEF2C	CAMK4	GATA4	NFATC4	CSNK1A1	MYH2	MAPK1	ELSPBP1	DTR
nfkbPathway	BioCarta	TNF	TRADD	MAP3K1	CHUK	NFKBIA	IKBKG	MAP3K7	FADD	TNFRSF1A	TLR4	MAP3K14	IL1A	RELA	TNFRSF1B	IRAK1	MAP3K7IP1	IKBKB	NFKB1	TNFAIP3	RIPK1	MYD88	TRAF6	IL1R1
ngfPathway	BioCarta	RAF1	NGFB	SOS1	KLK2	HRAS	GRB2	JUN	MAPK3	PIK3CA	DPM2	PIK3R1	NGFR	CSNK2A1	PLCG1	FOS	MAP2K1	SHC1	ELK1	MAPK8
nkcellsPathway	BioCarta	LAT	VAV1	KLRD1	RAC1	MAPK3	IL18	ITGB1	KLRC4	PIK3CA	PTPN6	KLRC1	PIK3R1	HLA-A	PTK2B	PAK1	MAP2K1	KLRC2	SYK	KLRC3	B2M
nktPathway	BioCarta	IL2	TGFB2	CCR3	IL4	CSF2	CCR2	CXCR3	IFNGR2	IL4R	IFNGR1	IL12B	IFNG	CCL4	IL12RB1	IL5	IL12RB2	IL12A	CXCR4	CD4	TGFB3	CCR7	CCR4	TNFSF5	CCR5	CCR1	TGFB1	CD28	IL18R1	CCL3
no1Pathway	BioCarta	PRKAR2A	TNNI1	PDE3A	HSPCA	PRKAR2B	AKT1	PRKAR1A	PRKG1	CALM1	NOS3	PRKACG	FLT1	FLT4	BDK	SYT1	CALM2	PDE2A	RYR2	CALM3	CHRM1	PRKACB	ACTA1	VEGF	CAV1	PRKAR1B	CHRNA1	BDKRB2	PRKG2	SLC7A1	PDE3B	KDR
no2il12Pathway	BioCarta	CD3E	IL12B	STAT4	CD3Z	IFNG	NOS2A	JAK2	CD2	IL12RB1	IL12RB2	IL12A	CD4	TYK2	CXCR3	CD3G	CCR5	CD3D
nos1Pathway	BioCarta	CALM3	PPP3CB	GRIN2D	PRKAR2A	PRKACB	GRIN2A	GRIN2C	PRKCB1	PRKCA	PPP3CC	PRKAR2B	PRKAR1A	GRIN2B	DLG4	CALM1	PRKACG	PRKAR1B	SYT1	CALM2	GRIN1	NOS1	PPP3CA
notchPathway	BLACK	NOTCH1	PSEN1	FURIN	DLL1	RBPSUH	ADAM17
nthiPathway	BioCarta	EP300	TNF	CHUK	NFKBIA	MADH4	IL1B	MAP3K7	IL8	NR3C1	MADH3	MAP2K3	MAPK14	MAP3K14	MAP2K6	RELA	TGFBR2	MAPK11	IKBKB	TLR2	NFKB1	MYD88	TGFBR1	DUSP1	CREBBP
ox40Pathway	BLACK	TNFRSF4	IL2	TNFSF4
p27Pathway	BioCarta	CDKN1B	RBX1	E2F1	CKS1B	SKP1A	UBE2M	TFDP1	CUL1	CDK2	CCNE1	NEDD8	SKP2	RB1
p35alzheimersPathway	BioCarta	MAPT	CDK5R1	CAPN1	GSK3B	CAPNS1	CSNK1A1	PPP2CA	CSNK1D	APP	CAPNS2	CDK5
p38mapkPathway	BioCarta	MAX	TGFB2	HSPB2	MAP3K7	MAPK14	RAC1	MAP2K6	ATF2	MEF2D	PDZGEF1	RIPK1	SHC1	TGFBR1	MAPKAPK5	MYC	MEF2B	MAP2K4	TRAF2	TRADD	CDC42	HSPB1	MAP3K1	HMGN1	MEF2C	MKNK1	HRAS	GRB2	PLA2G4A	MAP3K9	TGFB3	STAT1	MAP3K5	MAPKAPK2	DDIT3	RPS6KA5	CREB1	MEF2A	DAXX	ELK1	TGFB1
p53_signalling	BioCarta	BZRP	WRN	WT1	RELA	NDRG4	CCNH	APEX1	SIRT1	CTSD	CHEK1	TP53BP2	MAP2K7	BRCA1	MYC	TNFRSF10B	TNF	EP300	ACTA1	TP53	KIP2	DAXX	ABCB1	CREBBP	CASP9	STAT5A	PRKCB1	HIPK2	GADD45A	MAP4	PMP22	PPIA	PMAIP1	TRAF5	PRKCG	ATR	CDC2	CSNK2A2	TRAF1	RB1	TNFSF6	REPRIMO	E1B-AP5	APAF1	GTSE1	NDRG2	BRAP	TRAF4	BAP1	TP53AP1	NDRG3	PRKDC	BCL2	MTBP	NUMB	PRKCA	CDK7	TP73	HSPA4	TEAD1	MDM2	EI24	HIF1A	BAI1	CSNK2A1	CDKN2A	TP73L	CHEK2	RRM2B	PML	ATM	P53AIP1	ESR1	CSNK2B	SP1	RPL13A	MAPK8IP2	THRA	LRDD	BAX	BBC3	PRKCQ	MAP2K4	NDRG1	TNFAIP1	FAF1	RASA1	E2F1	SERPINB5	FADD	TTRAP	WIG1	GAPD	THBS1	TBP	DP1	CSNK1A1	SFN	NFKB1	CDKN1A	PCAF	ACTB
p53hypoxiaPathway	BioCarta	ATM	HIC1	FHL2	HSPCA	CPB2	AKT1	IGFBP3	MDM2	GADD45A	HIF1A	NFKBIB	TP53	HSPA1A	CSNK1A1	BAX	NQO1	CSNK1D	ABCB1	CDKN1A	MAPK8
p53Pathway	BioCarta	ATM	BCL2	E2F1	CDK2	TIMP3	PCNA	CCNE1	MDM2	GADD45A	TP53	CCND1	BAX	CDK4	RB1	CDKN1A	APAF1
par1Pathway	BioCarta	GNAQ	GNAI1	GNGT1	MAP3K7	PRKCB1	PRKCA	PPP1R12B	F2R	GNA12	F2RL3	F2	PLCB1	ARHGEF1	ROCK1	ADCY1	GNA13	PIK3CA	PIK3R1	PTK2B	GNB1	ARHA
parkinPathway	BioCarta	SNCAIP	UBE2L6	UBE2E2	UBE2L3	PNUTL1	UBE2G1	UBE2F	UBL1	PARK2	UBE2G2	SNCA	GPR37
parkinsonsPathway	BLACK	PARK2	SNCA
pdgfPathway	BioCarta	STAT5A	SOS1	PRKCB1	PDGFRA	MAPK3	JUN	PDGFA	PIK3R1	PLCG1	MAP2K1	SHC1	STAT3	RAF1	MAP2K4	RASA1	MAP3K1	SRF	PRKCA	GRB2	HRAS	JAK1	STAT1	PIK3CA	CSNK2A1	FOS	ELK1	MAPK8
pelp1Pathway	BioCarta	EP300	ESR1	PELP1	MAPK1	SRC	MAPK3	CREBBP
Pentose_Phosphate_Pathway	BLACK	TKT	RPE	G6PD	PGD	TALDO1	PGLS	RPIA
pentosePathway	BLACK	G6PD	PGD	PGLS	RPIA
pepiPathway	BioCarta	ELA2B	ELA2	GRN	SLPI	IL8	ELA3B	ELA2A	ELA1
pgc1aPathway	BioCarta	PPARA	CALM3	PPP3CB	CAMK2D	MEF2B	CAMK1	CAMK2G	MEF2C	SLC2A4	CAMK2A	PPP3CC	CAMK4	PPARGC1	MEF2D	HDAC5	CAMK2B	CALM1	MEF2A	YWHAH	SYT1	CALM2	ESRRA	CAMK1G	PPP3CA
pitx2Pathway	BioCarta	EP300	GSK3B	LEF1	PITX2	WNT1	TRRAP	AXIN1	HTATIP	FZD1	HDAC1	PPARBP	DVL1	LDB1	CTNNB1	APC	CREBBP
pkcPathway	BioCarta	GNAQ	NFKBIA	NFKB1	PRKCA	PRKCB1	RELA	PLCB1
plcdPathway	BioCarta	TGM2	PRKCA	PRKCB1	ADRA1B	PLCD1
plcePathway	BioCarta	ADRB2	PTGER1	ADCY1	PRKACG	PRKAR2A	PRKAR1B	PLCE1	PRKACB	GNAS	PRKAR2B	RAP2B	PRKAR1A
plcPathway	BioCarta	PIK3CA	VAV1	PIK3R1	PLCG1	PRKCA	PRKCB1	AKT1	PLCB1
plk3Pathway	BioCarta	ATM	CDC25C	CNK	TP53	CHEK2	YWHAH	CHEK1	ATR
pmlPathway	BioCarta	TNF	UBL1	HRAS	TNFRSF1A	SP100	RARA	PRAM-1	PAX3	TNFRSF1B	TP53	SIRT1	RB1	TNFRSF6	DAXX	PML	TNFSF6	CREBBP
pparaPathway	BioCarta	PPARA	CD36	NOS2A	FABP1	NR2F1	RELA	PRKACG	ACOX1	PIK3R1	NR0B2	FRA8B	MYC	EP300	TNF	SRA1	FAT	PTGS2	PRKACB	STAT5B	PRKCA	MRPL11	PPARGC1	CPT1B	HSD17B4	PIK3CA	PRKAR1B	NCOR2	CREBBP	PRKAR2A	NCOR1	STAT5A	CITED2	DUT	NFKBIA	PRKCB1	SP1	HSPCA	PRKAR2B	MAPK3	JUN	PRKAR1A	PDGFA	INS	HSPA1A	EHHADH	PPARBP	NCOA1	DUSP1	RXRA	ME1	APOA2	RB1	MAPK1	APOA1	NRIP1	LPL	NR1H3
ppargPathway	BioCarta	PPARG	EP300	NCOA2	RXRA	PPARBP	NCOA1	LPL	PPARGC1	CREBBP
pparPathway	BLACK	PPARG	PPARA	RXRA	PPARD
Proteasome_Degradation	BioCarta	RPS27A	PSMA4	PSMC6	PSMC3	PSMA1	PSMB6	PSMD8	UBA52	PSMD2	PSMD5	PSMC1	PSMA6	H2AFX	UBE2D3	PSME2	PSMC2	UBE2D1	UBE1L	PSMB9	IFNG	PSMD3	H2AFZ	UBC	PSMB7	PSMD4	PSMC4	MKI67	PSMC5	UBE2D2	PSMD1	PSMA7	UBE1
proteasomePathway	BioCarta	PSMB1	PSMD14	PSMB5	PSMA4	RPN2	PSMC3	PSMB2	PSMA1	PSMB7	PSMB6	PSMA5	UBE2A	RPN1	PSMA2	PSMB3	PSMA6	UBE3A	PSMA3	PSMB4	PSMA7	UBE1
ps1Pathway	BioCarta	PSEN1	GSK3B	TCF1	WNT1	BTRC	RBPSUH	AXIN1	ADAM17	NOTCH1	FZD1	DLL1	DVL1	CTNNB1	APC
ptc1Pathway	BioCarta	CDC25C	SHH	CCNH	CDC2	MNAT1	PTCH	XPO1	CDC25A	CDC25B	CCNB1	CDK7
ptdinsPathway	BioCarta	PFKM	GSK3B	PDPK1	AP2A1	PFKP	LYN	PFKL	RAC1	AP2M1	BTK	AKT1	EEA1	ARF1	RAB5A	BAD	PLCG1	GSK3A	PRKCZ	PRKCE	GRASP	PFKX	VAV2	RPS6KB1
ptenPathway	BioCarta	CDKN1B	PDPK1	PTK2	SOS1	PDK2	GRB2	BCAR1	MAPK3	AKT1	ILK	ITGB1	PIK3CA	PIK3R1	MAPK1	SHC1	TNFSF6	FOXO3A	PTEN
pyk2Pathway	BioCarta	SOS1	PRKCB1	MAPK14	BCAR1	RAC1	MAPK3	JUN	CALM1	PLCG1	PAK1	SYT1	CALM2	MAP2K1	SHC1	RAF1	CALM3	GNAQ	MAP2K4	MAP3K1	PRKCA	GRB2	HRAS	CRKL	MAP2K3	PTK2B	MAP2K2	MAPK1	SRC	MAPK8
rabPathway	BioCarta	RAB7	MEL	RAB27A	RAB11A	RAB5A	RAB3A	ACTA1	RAB1A	RAB9A	RAB2	RAB6A	RAB4A
rac1Pathway	BioCarta	PLD1	VAV1	MAP3K1	PDGFRA	PPP1R12B	WASF1	ARFIP2	RAC1	TRIO	CFL1	CHN1	MYL2	CDK5R1	LIMK1	MYLK	PIK3CA	PIK3R1	RALBP1	PAK1	NCF2	RPS6KB1	CDK5
raccycdPathway	BioCarta	RAF1	CDKN1B	E2F1	TFDP1	NFKBIA	CDK6	HRAS	CDK2	RAC1	RELA	MAPK3	AKT1	CCNE1	PIK3CA	CCND1	PIK3R1	NFKB1	CDK4	PAK1	RB1	MAPK1	CDKN1A	ARHA
radiation_sensitivity	BioCarta	ACTB	ATM	ATR	BAX	BCL2	CASP1	CCNB2	CCND2	CCND3	CCNE1	CDC2	CDKN1A	EGFR	ERBB2	GADD45A	GAPD	HRAS	IGF1R	IGFBP3	LCMT2	MDM2	RAD50	RAD51	RB1	TNFRSF6	TNFSF6	TP53
ranklPathway	BioCarta	TNFRSF11A	FOSL1	IFNB1	PRKR	RELA	IFNAR1	TNFSF11	ISGF3G	IFNAR2	NFKB1	FOS	TRAF6	FOSL2	MAPK8
ranPathway	BioCarta	CHC1	RANBP2	RAN	RANGAP1	RANBP1
rarPathway	BLACK	RXRA	CDK7	RARA
rarrxrPathway	BioCarta	HDAC3	RXRA	GTF2B	RARA	POLR2A	NCOA3	GTF2F1	GTF2A1	NCOA2	TBP	GTF2E1	ERCC3	NCOA1	NCOR2	PCAF
rasPathway	BioCarta	AKT1	ARHA	BAD	BCL2L1	CASP9	CDC42	CHUK	ELK1	H2AFX	HRAS	MAP2K1	MAPK3	MLLT7	NFKB1	PIK3CA	PIK3R1	RAC1	RAF1	RALA	RALBP1	RALGDS	RELA	RHOA
rbPathway	BioCarta	ATM	CDC25A	CDK2	CDC25B	CDC2	CDC25C	WEE1	TP53	CDK4	YWHAH	RB1	CHEK1	MYT1
reckPathway	BioCarta	TIMP2	TIMP4	RECK	HRAS	TIMP1	TIMP3	MMP2	MMP14	MMP9
reelinPathway	BioCarta	CDK5R1	DAB1	FYN	VLDLR	LRP8	CDK5	RELN
relaPathway	BioCarta	EP300	TNF	HDAC3	TRADD	CHUK	NFKBIA	IKBKG	FADD	TNFRSF1A	RELA	TNFRSF1B	IKBKB	NFKB1	RIPK1	TRAF6	CREBBP
rhoPathway	BioCarta	ARPC4	OPHN1	GSN	DIAPH1	ARPC1A	MYL2	LIMK1	MYLK	BAIAP2	ACTR2	ARHGAP5	PFN1	ACTR3	PIP5K1B	ARHGAP6	ARPC3	PPP1R12B	VCL	PIP5K1A	CFL1	ARHGEF11	ARHGEF1	ARPC2	ARPC1B	ROCK1	ARHGAP4	ARHGEF5	ARHGAP1	TLN1	SRC	ARHA
rnaPathway	BioCarta	EIF2S1	TP53	NFKBIA	CHUK	NFKB1	DNAJC3	MAP3K14	EIF2S2	RELA	PRKR
S1P_Signaling	BioCarta	MAPK6	PLCB2	GNAI2	MAPK3	AKT1	PIK3C2B	AKT3	MAPK4	EDG5	GNAI1	RACGAP1	AKT2	SPHK2	MAPK12	EDG3	MAPK7	GNAI3	PLCB1	SPHK1	ASAH1	EDG1	EDG8	MAPK1	PLCB3	LOC96626
s1pPathway	BioCarta	MBTPS2	EPLIN	SREBF1	MBTPS1	SCAP	HMGCS1	LDLR	SREBF2
SA_B_CELL_RECEPTOR_COMPLEXES	SigmaAldrich	VAV1	PAPPA	MAP3K1	SOS1	MAPK8IP3	HRAS	LYN	GRB2	RAC1	RPS6KA3	JUN	MAPK3	ATF2	VAV3	MAPK1	RPS6KA1	FOS	MAP2K1	SHC1	BLNK	SYK	ELK1	VAV2	BCR
SA_BONE_MORPHOGENETIC	SigmaAldrich	BMPR1B	BMP1	MADH4	BMPR2	BMPR1A	MADH1	MADH6
SA_CASPASE_CASCADE	SigmaAldrich	CASP9	BIRC3	SREBF1	PRF1	GZMB	DFFB	CASP7	CASP3	BIRC4	ADPRT	TNFRSF6	SCAP	BIRC2	CASP8	TNFSF6	CASP10	DFFA	SREBF2	APAF1
SA_DAG1	SigmaAldrich	PDE1B	ESR1	PLCB2	ITPKA	ESR2	PDE1A	TRH	VIP	PRL	PLCB1
SA_FAS_SIGNALLING	SigmaAldrich	PDE6D	CASP3	BCL2	TNFRSF6	CFLAR	P11	CASP8	CFL1	TNFSF6
SA_G1_AND_S_PHASES	SigmaAldrich	E2F2	CDKN1B	E2F1	CDK2	CFL1	PRB1	MDM2	TP53	ARF1	CCND1	CDKN2A	CDK4	ARF3	CDKN1A	NXT1
SA_G2_AND_M_PHASES	SigmaAldrich	CDC2	WEE1	CDC25A	CDC25B	CDK7	CDKN1A	CHEK1	NEK1
SA_MMP_CYTOKINE_CONNECTION	SigmaAldrich	SELL	TNF	TGFB2	IL1B	TNFSF8	CD44	TNFRSF1A	TNFRSF8	FCGR3A	IL6R	TNFRSF1B	ACE	SPN	CSF1	TGFB1
SA_PROGRAMMED_CELL_DEATH	SigmaAldrich	BCL2L11	CASP9	BCL10	BCL2	BAD	BAX	CES1	CASP8AP2	BCL2L1	BAK1	BID	APAF1
SA_PTEN_PATHWAY	SigmaAldrich	BPNT1	PDK1	AKT2	SOS1	GRB2	RBL2	MAPK3	AKT1	ILK	PIK3CA	AKT3	PTK2B	PIK3CD	MAPK1	SHC1	PIP3-E	PTEN
SA_REG_CASCADE_OF_CYCLIN_EXPR	SigmaAldrich	E2F2	CDKN1B	E2F1	CDK2	CCNA2	PRB1	CCNA1	CCNE1	E2F4	CCND1	CDKN2A	CDK4	CCNE2
SA_TRKA_RECEPTOR	SigmaAldrich	NGFB	AKT2	NTRK1	SOS1	GRB2	HRAS	AKT1	PIK3CA	NGFR	AKT3	PIK3CD	MAP2K2	MAP2K1	SHC1	CDKN1A	ELK1	ARHA
salmonellaPathway	BioCarta	ARPC2	ACTR3	WASL	ARPC1B	ARPC4	CDC42	ARPC3	WASF1	RAC1	ACTR2	ACTA1	ARPC1A
sarsPathway	BioCarta	ANPEP	GPT	FBL	LDHB	MAPK14	NCL	LDHC	CKM	LDHA	EIF4E
setPathway	BioCarta	APEX1	PRF1	HMGB2	GZMB	DFFB	SET	ANP32A	NME1	GZMA	DFFA	CREBBP
shhPathway	BioCarta	SHH	PRKAR2A	GSK3B	GLI	PRKACB	PRKAR2B	PRKAR1A	GLI2	PRKACG	SUFU	SMO	PRKAR1B	DYRK1A	PTCH	DYRK1B	GLI3
SIG_BCR_Signaling_Pathway	SignallingAlliance	CD19	PPP1R13B	INPP5D	VAV1	SOS1	FLOT2	PPP3CC	MAPK3	AKT1	PTPRC	CSK	SOS2	MAP4K1	ITPR2	FLOT1	AKT3	PIK3R1	GSK3A	PIK3CD	NR0B2	NFATC2	SHC1	BLNK	CD81	PPP3CA	BCR	ITPR1	RAF1	PPP3CB	PDK1	NFATC1	GSK3B	AKT2	BCL2	GRB2	LYN	BTK	PLCG2	PIK3CA	BAD	CD22	CR2	MAPK1	SYK	ITPR3	DAG1
SIG_CD40PATHWAYMAP	SignallingAlliance	NFKBIA	MAPK14	TRAF3	MAPK8IP2	MAPK3	MAPK11	NFKBIB	PIK3R1	MAPK8IP1	PIK3CD	TNFRSF5	SYT1	NFKB2	TRAF6	MAP2K7	MAPKAPK5	DUSP1	MAPK13	MAP2K4	TRAF2	TRAF5	IKBKG	MAPK12	NFKBIL2	MAPK8IP3	NFKBIE	MAPK9	PIK3CA	GORASP1	MAPK10	NFKB1	MAPK1	NFKBIL1	MAPK8
SIG_CHEMOTAXIS	SignallingAlliance	ANGPTL2	WASL	PAK4	PPP1R13B	RHO	GDI1	AKT1	PAK3	LIMK1	MYLK	PAK6	ITPR2	AKT3	PIK3R1	PIK3CD	PAK1	ACTR2	ITPR1	ACTR3	PDK1	AKT2	RACGAP1	CDC42	INPPL1	CFL2	WASF1	PITX2	GDI2	MYLK2	PAK7	CFL1	BTK	SAG	RPS4X	ARHGEF11	ROCK2	ROCK1	PIK3CA	ARHGAP4	P101-PI3K	ARHGAP1	PAK2	ITPR3	PTEN	PIK3CG
SIG_IL4RECEPTOR_IN_B_LYPHOCYTES	SignallingAlliance	PPP1R13B	SOS1	MAPK3	AKT1	MAP4K1	SOS2	PIK3R1	AKT3	GSK3A	PIK3CD	SHC1	SOCS1	IL4R	IRS1	RAF1	PDK1	GSK3B	AKT2	BCL2	GRB2	STAT6	JAK1	JAK3	PIK3CA	IRS2	BAD	MAPK1
SIG_InsulinReceptorPathwayInCardiacMyocytes	SignallingAlliance	YWHAZ	LNPEP	SLC2A4	FLOT2	PSCD3	RPS6KA3	RPS6KA2	PIK3R1	PPYR1	YWHAH	IRS1	RPS6KB1	SERPINB6	PDK1	GSK3B	AKT2	IGFBP1	CDC42	GRB2	SORBS1	YWHAQ	PIK3CA	CDKN2A	RPS6KA1	SOS1	MAPK3	YWHAE	PARD3	AKT1	BRD4	SOS2	PTPN1	AKT3	FLOT1	GSK3A	PIK3CD	SHC1	FOXO1A	RAF1	CBL	F2RL2	INPPL1	CAP1	IRS4	YWHAB	PARD6A	IRS2	SFN	MAPK1	YWHAG	PTEN
SIG_PIP3_signaling_in_B_lymphocytes	SignallingAlliance	CD19	PPP1R13B	VAV1	FLOT2	PSCD3	GAB1	RPS6KA3	AKT1	PTPRC	RPS6KA2	ITPR2	FLOT1	AKT3	NR0B2	FOXO3A	BCR	RPS6KB1	PREX1	ITPR1	PDK1	AKT2	LYN	PITX2	BTK	SAG	PIK3CA	PLCG2	P101-PI3K	CDKN2A	RPS6KA1	TEC	PHF11	DAPP1	SYK	ITPR3	PTEN
SIG_PIP3SIGINCARDIACMYOCTES	SignallingAlliance	YWHAZ	SLC2A4	PSCD3	RPS6KA3	CREB3	PAK3	MET	PAK6	RPS6KA2	CREB5	YWHAH	IFI27	IRS1	RPS6KB1	MYC	PREX1	ERBB4	PDK1	GSK3B	AKT2	CDC42	IGFBP1	PTK2	GRB2	CDK2	YWHAQ	NOLC1	IGF1	PIK3CA	CDKN2A	RPS6KA1	BCL2L1	PAK4	PPP1R13B	SOS1	GAB1	PARD3	YWHAE	AKT1	FRAP1	SOS2	GADD45A	PTPN1	AKT3	GSK3A	PIK3CD	PAK1	SHC1	FOXO3A	TSC1	CDKN1B	EBP	F2RL2	INPPL1	TSC2	IRS4	PAK7	YWHAB	PARD6A	IRS2	BAD	P101-PI3K	SFN	CREB1	PAK2	PTEN	YWHAG
SIG_Regulation_of_the_actin_cytoskeleton_by_Rho_GTPases	SignallingAlliance	ANGPTL2	WASL	PAK4	FSCN2	FLNA	PFN2	RHO	GDI1	AKT1	PAK3	LIMK1	MYLK	PAK6	PAK1	FSCN1	PFN1	ACTR2	ACTR3	CDC42	ACTG1	CFL2	WASF1	GDI2	MYLK2	PAK7	CFL1	FSCN3	RPS4X	ROCK2	ROCK1	VASP	MYH2	PAK2	ACTG2	FLNC
skp2e2fPathway	BioCarta	CCNA1	CCNE1	E2F1	SKP1A	TFDP1	CUL1	CDK2	RB1	SKP2	CDC34
slrp2Pathway	BLACK	TGFB2	TGFBR1	TGFB3	TGFB1
slrpPathway	BioCarta	BGN	DSPG3	DCN	LUM	FMOD	KERA
soddPathway	BioCarta	TNFRSF1B	TNF	TRAF2	BIRC3	TRADD	BAG4	FADD	RIPK1	TNFRSF1A	CASP8
sppaPathway	BioCarta	RAF1	GNAI1	GNGT1	PTK2	PRKCA	PRKCB1	HRAS	F2R	PLA2G4A	MAPK3	F2RL3	F2	PLCB1	ITGB1	TBXAS1	MAPK1	PTGS1	SRC	ITGA1	MAP2K1	GNB1	SYK
spryPathway	BioCarta	RAF1	EGFR	RASA1	CBL	EGF	SOS1	GRB2	HRAS	SPRY2	MAPK3	SPRY1	SPRY3	PTPRB	MAPK1	SRC	MAP2K1	SHC1	SPRY4
srcRPTPPathway	BioCarta	CDC25C	CDC2	CDC25A	PRKCA	CDC25B	GRB2	CCNB1	PRKCB1	SRC	PTPRA	CSK
ST_ADRENERGIC	Signalling Transduction KE	EGFR	GNA15	MAPK14	AKT1	CCL13	ITPR2	PIK3R1	PIK3CD	CCL15	APC	PTX1	ITPKB	ITPR1	RAF1	GNA11	GNAQ	GNAI1	KCNJ9	CAMP	PITX2	BRAF	KCNJ5	AR	BF	PTX3	ASAH1	PIK3CA	MAPK10	ITPKA	MAPK1	SRC	KCNJ3	GAS	CCL16	DAG1	ITPR3	PHKA2
ST_B_Cell_Antigen_Receptor	Signalling Transduction KE	CD19	PPP1R13B	VAV1	NFKBIA	SOS1	PAG	AKT1	CSK	SOS2	NFAT5	NFKBIB	AKT3	PIK3R1	PIK3CD	MAP2K1	SHC1	BLNK	NFKB2	ITPKB	BCR	RAF1	EPHB2	AKT2	SERPINA4	NFKBIL2	GRB2	LYN	NFKBIE	BTK	PLCG2	PIK3CA	PI3	BAD	MAP2K2	ITPKA	NFKB1	MAPK1	SYK	NFKBIL1	DAG1
ST_Dictyostelium_discoideum_cAMP_Chemotaxis_Pathway	Signalling Transduction KE	ANGPTL2	PDE3A	GCA	MAPK3	AKT1	SGCB	ITPR2	PIK3R1	PIK3CD	PAK1	MAP2K1	NR1I3	ACTR2	ITPKB	PIK3C2G	ACTR3	ITPR1	DGKA	PSME1	ETFA	RPS4X	BF	PIK3CA	VASP	PI3	ITPKA	MAPK1	PDE3B	PLDN	DAG1	ITPR3	ITGA9	RIPK3
ST_Dictyostelium_discoideum_cAMP_Receptor_G_Protein_Independent_Pathways	BLACK	COPEB	PSME1	MAPK1	NR1I3
ST_Differentiation_Pathway_in_PC12_Cells	Signalling Transduction KE	EGR3	PTPN11	NTRK1	TUBA3	RPS6KA3	SH2B	CREB3	MAP1B	PACAP	MAPK8IP2	JUN	MAPK3	AKT1	MAPK8IP1	PIK3R1	EGR1	PIK3CD	CREB5	TERF2IP	SHC1	MAP2K7	TH	PIK3C2G	GNAQ	MAP2K4	MAPK8IP3	CAMP	CRKL	BRAF	MAPK9	FRS2	ASAH1	PIK3CA	EGR4	MAPK10	ATF1	CREB1	MAPK1	SRC	GAS	ELK1	DAG1	GRF2	OPN1LW	EGR2	MAPK8	CREBBP
ST_ERK1_ERK2_MAPK_Pathway	Signalling Transduction KE	SOS1	RPS6KA3	CREB3	TRAF3	MAPK3	EIF4E	SOS2	MAP3K8	RPS6KA2	EEF2K	CREB5	MAP2K1	SHC1	COPEB	RAP1A	ARAF1	DUSP4	MKNK1	GRB2	DUSP9	BRAF	HTATIP	MKNK2	BAD	MAP2K2	NFKB1	ATF1	CREB1	MAPK1	RPS6KA1	MOS	DUSP6
ST_Fas_Signaling_Pathway	Signalling Transduction KE	TUFM	VIL2	SMPD1	MET	NFKBIB	CASP3	ADPRT	NR0B2	PFN1	CAD	MAP2K7	EPHB2	TRAF2	HSPB1	MAP3K1	NFKBIL2	MAPK8IP3	HRB	BAK1	ROCK1	MAP3K5	TP53	MAPK10	TNFRSF6	DAXX	DIABLO	MAPK8	EGFR	NFKBIA	DEDD2	PFN2	BFAR	IL1A	MAPK8IP2	TPX2	FAIM2	MCP	NFAT5	MAPK8IP1	PTPN13	BIRC4	BAX	RIPK1	CASP8	NFKB2	CASP10	CDK2AP1	MAP2K4	FAF1	ALG2	CD7	FADD	IL8	NFKBIE	TNFRSF6B	BTK	MAPK9	DEDD	CSNK1A1	CASP8AP2	RALBP1	NFKB1	MAPK1	FREQ	NFKBIL1	DFFA
ST_G_alpha_5_Pathway	Signalling Transduction KE	RAF1	EPAC	CAMP	BRAF	BFAR	CREB3	BF	ASAH1	SNX13	CREB5	CREB1	MAPK1	SRC	TERF2IP	GAS	GRF2
ST_G_alpha_i_Pathway_	Signalling Transduction KE	RAP1GA1	EGFR	PLCB2	SOS1	AKT1	SOS2	ITPR2	AKT3	PIK3CB	SHC1	TERF2IP	STAT3	DRD2	ITPKB	ITPR1	RAF1	EPHB2	AKT2	KCNJ9	GRB2	PITX2	BRAF	KCNJ5	BF	PLCB1	RGS20	ASAH1	PI3	ITPKA	PLCB4	MAPK1	SRC	KCNJ3	PLCB3	DAG1	ITPR3
ST_G_Protein_Independent_7_Transmembrane	BLACK	EPHB2	CXADR	MAPK1	SOAT1
ST_G_Protein_Independent_7_Transmembrane_Receptor_Signaling	BLACK	EPHB2	CXADR	MAPK1	SOAT1
ST_Ga12_Pathway	Signalling Transduction KE	PLD1	RAF1	EPHB2	VAV1	PTK2	F2RL2	MAPK7	BTK	JUN	PLD3	BF	F2RL3	F2	DLG4	MYEF2	PLD2	RASAL1	MAPK1	SRC	TEC	MAP2K5	MAPK8	F2RL1
ST_Ga13_Pathway	Signalling Transduction KE	RDX	NFKBIA	AKT1	TBXA2R	NFKBIB	AKT3	PIK3CB	NFKB2	PLD1	MAP2K4	PDK1	AKT2	CDC42	SRF	BCL2	MAP3K1	PTK2	IKBKG	SERPINA4	NFKBIL2	NFKBIE	BF	PLD3	ARHGEF11	ROCK2	LPA	DLG4	ROCK1	MAP3K5	GNA13	PRKCM	PI3	PLD2	NFKB1	NFKBIL1	MAPK8	PHKA2
ST_Gaq_Pathway	Signalling Transduction KE	NFKBIA	AKT1	VN1R1	NFKBIB	ITPR2	AKT3	PIK3CB	NFKB2	ITPKB	PLD1	ITPR1	GNAQ	PDK1	AKT2	IKBKG	NFKBIL2	NFKBIE	PITX2	ADRBK1	BF	PLD3	NFKB1	PLD2	ITPKA	NFKBIL1	DAG1	ITPR3	PHKA2
ST_GRANULE_CELL_SURVIVAL_PATHWAY	Signalling Transduction KE	IL8RB	CREB3	JUN	MAPK8IP2	PACAP	MAPK8IP1	CASP3	CREB5	ADPRT	APC	MAP2K7	ITPKB	GNAQ	EPHB2	MAP2K4	CXCL2	MAPK8IP3	CAMP	CERK	MAPK9	ASAH1	MAPK10	ITPKA	CREB1	MAPK1	FOS	DAG1	MAPK8
ST_IL_13_PATHWAY	Signalling Transduction KE	IL13	IL13RA2	JAK2	IL13RA1	TYK2	IL4R	JAK1
ST_Integrin_Signaling_Pathway	Signalling Transduction KE	ANGPTL2	PAK3	GRLF1	ITGA4	ILK	MRAS	PAK6	MAP3K11	ITGA5	TERF2IP	ACTR2	MAP2K7	ITGA6	ABL1	EPHB2	AKT2	CDC42	ITGA10	PTK2	MAPK8IP3	GRB2	ITGA3	ROCK1	CAV1	PIK3CA	PLCG2	PKLR	ACK1	CDKN2A	MAPK10	TLN1	SRC	ITGA1	FYN	P4HB	MAPK8	PAK4	ARHGEF7	ITGA2	ITGB3BP	RALA	ITGA8	SOS1	BCAR1	CRK	RHO	MAPK8IP2	AKT1	ACTN1	SOS2	MYLK	MAPK8IP1	AKT3	PLCG1	PAK1	ITGA7	PIK3CB	CSE1L	SHC1	ARHGEF6	GRAF	ITGA11	RAF1	DDEF1	ACTR3	MAP2K4	BRAF	MYLK2	MAPK9	PAK7	ZYX	ROCK2	WAS	DOCK1	VASP	GRB7	MAPK1	PAK2	GRF2	ITGA9	TLN2	PTEN
ST_Interferon_gamma_Pathway	Signalling Transduction KE	STAT1	PLA2G2A	IFNG	JAK2	CISH	REG1A	PTPRU	IFNGR1	JAK1	STATIP1
ST_Interleukin_13_Pathway	Signalling Transduction KE	IL13	IL13RA2	JAK2	IL13RA1	TYK2	IL4R	JAK1
ST_Interleukin_4_Pathway	Signalling Transduction KE	PPP1R13B	INPP5D	JAK2	SOS1	IL4	IL2RG	AKT1	SOS2	AKT3	NR0B2	SHC1	IARS	IL4R	RPS6KB1	AKT2	SERPINA4	GRB2	IL13RA1	STAT6	TYK2	JAK1	JAK3	PIK3CA	PI3	CISH	SRC
ST_Jak_STAT_Pathway	Signalling Transduction KE	JAK3	PIAS1	JAK2	CISH	REG1A	PTPRU	PIAS3	SOAT1	JAK1
ST_JNK_MAPK_Pathway	Signalling Transduction KE	MAP3K10	DUSP8	PAPPA	MAP3K7	GAB1	MAP3K3	JUN	AKT1	ATF2	MAP3K13	GADD45A	NFATC3	MAP3K7IP1	NR2C2	MAP3K11	SHC1	TRAF6	MAP2K7	DLD	MAP2K4	GCK	DUSP10	DUSP4	CDC42	MAP3K1	MAPK7	MAP3K2	MAPK9	MAP3K9	MAP3K7IP2	ZAK	MAP3K5	TP53	MAP3K4	MYEF2	MAPK10	MAP3K12	IL1R1	MAP2K5	MAPK8
ST_MONOCYTE_AD_PATHWAY	Signalling Transduction KE	RAC1	RHO	AKT1	ITPR2	APC	ADRB1	PTX1	ITPR1	GNAQ	GNAI1	EPHB2	KCNJ9	CAMP	PITX2	PLB	KCNJ5	BF	HTATIP	PTX3	ASAH1	CAV3	DLG4	RYR1	MAPK1	KCNJ3	GAS	DAG1	ITPR3
ST_p38_MAPK_Pathway	Signalling Transduction KE	MAP3K10	MAP3K7	MAPK14	MAP2K6	CREB3	AKT1	MAPK11	EIF4E	GADD45A	MAP3K7IP1	EEF2K	CREB5	NR2C2	TRAF6	MAPKAPK5	DUSP1	MAPK13	MAP2K4	DUSP10	CDC42	HSPB1	SRF	MKNK1	MAPK12	MAP2K3	MAP3K7IP2	MKNK2	MAP3K5	MAP3K4	MYEF2	MAPKAPK2	NFKB1	ATF1	CREB1	MAPK1	IL1R1	ELK1
ST_PAC1_RECEPTOR_PATHWAY	Signalling Transduction KE	GNAQ	ITPKA	CAMP	GAS	PACAP	DAG1	ITPKB	ASAH1
ST_Phosphoinositide_3_Kinase_Pathway	Signalling Transduction KE	YWHAZ	A1BG	PPP1R13B	INPP5D	SOS1	PSCD3	RPS6KA3	YWHAE	AKT1	SOS2	RPS6KA2	AKT3	CSL4	GSK3A	YWHAH	P14	SHC1	IARS	RPS6KB1	FOXO1A	PDK1	GSK3B	AKT2	DAF	IGFBP1	GRB2	BTK	YWHAB	YWHAQ	PIK3CA	BAD	CDKN2A	SFN	RPS6KA1	TEC	DAPP1	PTEN	YWHAG
ST_STAT3_Pathway	Signalling Transduction KE	JAK3	JAK2	CISH	SRC	REG1A	PTPRU	IL6	PIAS3	STAT3	JAK1	IL6R
ST_T_Cell_Signal_Transduction	Signalling Transduction KE	LAT	PAK4	ZAP70	VAV1	NFKBIA	CTLA4	SOS1	GRAP2	LCK	LCP2	PAG	PTPRC	PAK3	CSK	SOS2	NFAT5	NFKBIB	PAK6	NCK1	PLCG1	PAK1	ITK	CD3D	NFKB2	ITPKB	RAF1	RASGRP3	EPHB2	CBL	NFKBIL2	GRB2	NFKBIE	RASGRP2	PAK7	RASGRP1	ITPKA	NFKB1	MAPK1	RASGRP4	PAK2	FBXW7	DTYMK	NFKBIL1	DAG1	CD28
ST_Tumor_Necrosis_Factor_Pathway	Signalling Transduction KE	NFKBIA	MAP3K7	TNFRSF1A	MAP3K3	JUN	TNFRSF1B	NFKBIB	CASP3	BAG4	NR2C2	BIRC2	CFLAR	RIPK1	CASP8	NFKB2	TNF	MAP2K4	BIRC3	TRAF2	TRADD	IKBKG	NFKBIL2	FADD	NFKBIE	HRB	RALBP1	NFKB1	TNFAIP3	NFKBIL1
ST_Type_I_Interferon_Pathway	Signalling Transduction KE	STAT1	ISGF3G	STAT2	REG1A	TYK2	PTPRU	IFNB1	IFNAR1	JAK1
ST_Wnt_beta_catenin_Pathway	Signalling Transduction KE	PSEN1	CER1	DKK4	NKD1	SFRP1	LAMR1	NKD2	AKT1	ANKRD6	AKT3	GSK3A	MVP	TSHB	IDAX	APC	CTNNB1	FRAT1	FSTL1	GSK3B	AKT2	C22orf2	AXIN1	DKK3	WIF1	DKK2	PIN1	AXIN2	CSNK1A1	DVL1	DKK1	SENP2	LRP1	PTPRA	DACT1
ST_Wnt_Ca2_cyclic_GMP_Pathway	Signalling Transduction KE	ITPR1	PDE6H	CAMK2D	PDE6D	CAMK2G	CAMK2A	PDE6C	BF	PDE6B	TF	CAMK2B	NFAT5	ITPR2	PDE6A	ITPKA	SLC6A13	PDE6G	DAG1	ITPR3	ITPKB
stat3Pathway	BioCarta	JAK3	JAK2	MAPK1	TYK2	MAPK3	STAT3	JAK1	FRAP1
stemPathway	BioCarta	IL2	CSF3	IL9	IL5	IL8	CD4	IL4	IL3	CSF2	CD8A	IL11	IL7	CSF1	EPO	IL6
stressPathway	BioCarta	TANK	NFKBIA	MAPK14	TNFRSF1A	MAP2K6	JUN	RELA	CRADD	IKBKB	RIPK1	TNF	MAP2K4	TRAF2	TRADD	MAP4K2	MAP3K1	IKBKG	CHUK	MAP2K3	MAP3K14	NFKB1	ATF1	CASP2	MAPK8	LTA
tall1Pathway	BioCarta	TRAF2	TRAF5	CHUK	MAPK14	MAP3K14	TRAF3	RELA	TNFSF13B	TNFRSF13C	TNFRSF13B	TNFRSF17	NFKB1	TRAF6	MAPK8	TNFSF13
tcapoptosisPathway	BioCarta	CD3E	TRB@	CD3Z	CD3G	TNFRSF6	CCR5	TRA@	CD3D	CD4	TNFSF6	CD28
tcraPathway	BioCarta	TRB@	CD3E	HLA-DRA	ZAP70	CD3Z	TRA@	LCK	CD4	PTPRC	CD3G	CD3D	FYN	HLA-DRB1
tcrMoleculePathway	BLACK	CD3E	TRB@	CD3Z	CD3G	TRA@	CD3D
tcrPathway	BioCarta	CD3E	LAT	CD3Z	ZAP70	PTPN7	VAV1	NFKBIA	SOS1	PRKCB1	PPP3CC	RAC1	LCK	RELA	JUN	MAPK3	CALM1	NFATC3	PIK3R1	CD3G	PLCG1	SYT1	CALM2	MAP2K1	CD3D	NFATC2	SHC1	PPP3CA	CALM3	RAF1	TRB@	PPP3CB	MAP2K4	NFATC1	RASA1	MAP3K1	HRAS	GRB2	PRKCA	TRA@	PIK3CA	NFATC4	NFKB1	FOS	FYN	ELK1	MAPK8
tcytotoxicPathway	BioCarta	TRB@	CD3E	CD3Z	CD2	TRA@	THY1	PTPRC	CD3G	CD8A	ICAM1	CD3D	ITGB2	ITGAL	CD28
telPathway	BioCarta	IGF1R	EGFR	TERT	KRAS2	BCL2	PRKCA	XRCC5	HSPCA	POLR2A	G22P1	AKT1	TEP1	TP53	TERF1	TNKS	RB1	PPP2CA	MYC
tercPathway	BioCarta	NFYC	RB1	SP1	SP3	NFYB	NFYA
tertPathway	BioCarta	TP53	MAX	HDAC1	SP1	SP3	WT1	MYC	ZNF42
TGF_Beta_Signaling_Pathway	BioCarta	RUNX3	LIF	RUNX2	OAZ	MADH4	MADH3	JUN	TGIF	MAPK3	FST	FKBP1A	MADH6	TGFBR3	ZFHX1B	TFE3	ITGB6	MADH1	ENG	CTNNB1	TGFBR1	STAT3	SKIL	SERPINE1	NOG	TNF	MADHIP	IFNG	EGF	LEF1	MADH7	MAPK9	TGFBR2	FOXH1	STAT1	MADH2	THBS1	INHBA	SKI	SPP1	NFKB1	MADH5	FOS	BMP4	TGFB1	CREBBP
tgfbPathway	BioCarta	EP300	MADHIP	TGFB2	MADH4	MAP3K7	MADH3	MADH7	MAPK3	TGFB3	TGFBR2	MADH2	CDH1	MAP3K7IP1	MAP2K1	TGFBR1	APC	SKIL	TGFB1	CREBBP
th1th2Pathway	BioCarta	IL2	IL12B	HLA-DRA	IFNG	IL12RB1	IL12RB2	IL12A	IL4	IL18	CD86	TNFSF5	IFNGR2	TNFRSF5	HLA-DRB1	IL4R	CD28	IL2RA	IFNGR1	IL18R1
thelperPathway	BioCarta	TRB@	CD3E	CD3Z	CD2	TRA@	THY1	CD4	PTPRC	CD3G	ICAM1	CD3D	ITGB2	ITGAL	CD28
tidPathway	BioCarta	TNF	IFNG	JAK2	NFKBIA	TNFRSF1A	RELA	WT1	TNFRSF1B	DNAJA3	TP53	IKBKB	LIN7A	HSPA1A	NFKB1	IFNGR2	RB1	USH1C	IFNGR1	TIP-1
tnf_and_fas_network	BioCarta	TNF	TRAF2	TRAF5	TANK	TNFRSF1A	TRAF3	TNFSF10	SMN1	GAPD	TNFRSF1B	TRIP	BIRC4	TRAF1	TNFAIP3	TNFRSF6	BIRC2	DAXX	BIRC5	BIRC1	TNFSF6	TRAF6	ACTB
tnfr1Pathway	BioCarta	LMNB2	MAP3K7	ARHGDIB	TNFRSF1A	JUN	CRADD	CASP3	ADPRT	BAG4	PAK1	RIPK1	CASP8	LMNA	TNF	PRKDC	MAP2K4	TRAF2	TRADD	MAP3K1	SPTAN1	FADD	LMNB1	MADD	DFFB	RB1	PAK2	CASP2	DFFA	MAPK8
tnfr2Pathway	BioCarta	IKBKAP	TRAF2	TANK	MAP3K1	IKBKG	CHUK	NFKBIA	MAP3K14	TRAF3	RELA	TNFRSF1B	IKBKB	TRAF1	NFKB1	TNFAIP3	RIPK1	DUSP1	LTA
tob1Pathway	BioCarta	CD3E	TRB@	IL2	CD3Z	TGFB2	IFNG	MADH4	MADH3	TRA@	IL4	TGFB3	TGFBR2	TOB2	CD3G	TOB1	TGFBR3	CD3D	TGFBR1	CD28	TGFB1	IL2RA
tollPathway	BioCarta	PPARA	TLR9	PGLYRP	NFKBIA	MAP3K7	MAPK14	MAP2K6	RELA	PRKR	JUN	CD14	IRAK1	MAP3K7IP1	IKBKB	TLR2	TLR7	TLR10	MYD88	TRAF6	TOLLIP	MAP2K4	SITPEC	MAP3K1	IKBKG	CHUK	MAP2K3	TLR4	MAP3K14	LY96	MAP3K7IP2	TLR3	NFKB1	TLR6	FOS	TIRAP	ELK1	MAPK8
torPathway	BLACK	IDH1	ACO1	IDH2
tpoPathway	BioCarta	RAF1	MPL	STAT5A	RASA1	JAK2	SOS1	PRKCB1	GRB2	STAT5B	HRAS	PRKCA	JUN	MAPK3	STAT1	PIK3CA	PIK3R1	CSNK2A1	PLCG1	FOS	MAP2K1	THPO	SHC1	STAT3
trkaPathway	BioCarta	NGFB	NTRK1	SOS1	KLK2	PRKCB1	GRB2	HRAS	PRKCA	AKT1	PIK3CA	DPM2	PIK3R1	PLCG1	SHC1
tRNA_Synthetases	BioCarta	KARS	DARS	VARS2	LARS	GARS	HARSL	YARS	AARS	QARS	KIAA1522	NARS	CARS	RARS	EPRS	SARS	MARS	TARS	IARS	WARS	HARS
tsp1Pathway	BioCarta	THBS1	CD36	CASP3	MAPK14	FOS	JUN	FYN
tubbyPathway	BioCarta	GNAQ	CHRM1	GNGT1	GNB1	PLCB1	HTR2C	TUB
tumor_supressor	BioCarta	MADH4	IRF1	WT1	BRCA2	CDKN2D	CCL26	APC	TGFBR1	LCMT2	BRCA1	EP300	CDKN1B	TSC2	CDKN1C	CFL1	TGFBR2	GAPD	VHL	TP53	MSH2	RB1	NF2	OPN1LW	CREBBP	ACTB	PTEN
ucalpainPathway	BioCarta	ACTN3	ITGB3	PTK2	SPTAN1	VIL2	ACTN2	RAC1	PXN	ACTA1	ACTN1	CAPN1	ITGB1	CAPNS1	TLN1	SRC	ITGA1	CAPNS2	ARHA
ureacyclePathway	BioCarta	GLS	ASL	GOT1	GLUD1	ARG1	CPS1	ASS
vegfPathway	BioCarta	EIF2S1	EIF2B1	EIF2B4	PRKCB1	PXN	NOS3	PIK3R1	FLT1	FLT4	PLCG1	EIF2B5	EIF1	SHC1	EIF1A	PTK2	PRKCA	EIF2B2	HRAS	EIF2S2	ARNT	VEGF	EIF2B3	VHL	HIF1A	PIK3CA	EIF2S3	KDR	ELAVL1
vifPathway	BLACK	HCK	CXCR4	CD4
vipPathway	BioCarta	PRKAR2A	EGR3	NFKBIA	PPP3CC	PRKAR2B	RELA	PRKAR1A	CALM1	PRKACG	VIPR2	PLCG1	SYT1	CALM2	NFATC2	MYC	PPP3CA	CALM3	GNAQ	PPP3CB	NFATC1	PRKACB	MAP3K1	CHUK	VIP	PRKAR1B	NFKB1	EGR2
vitcbPathway	BioCarta	COL4A3	SLC2A1	COL4A1	SLC2A3	COL4A5	COL4A6	COL4A2	SLC23A2	SLC23A1	COL4A4	P4HB
vobesityPathway	BioCarta	PPARG	TNF	RXRA	RETN	NR3C1	HSD11B1	LPL	APM1
VOXPHOS	BioCarta	QP-C	ATP5J2	NDUFS2	NDUFC2	NDUFA10	NDUFB8	UQCRFS1	ATP5J	NDUFA2	MBD3	NDUFB6	UQCRC2	UQCR	NDUFAB1	MGC40084	NDUFB7	COX15	ATP5C1	COX5A	UQCRB	COX6A2	NDUFA6	ATP5I	BCS1L	NDUFS7	NDUFB4	NGFRAP1	NFKBIL2	CYB5	NDUFC1	COX5B	ATP5B	CKAP1	COX7A1	LOC56901	CYC1	CYCS	NDUFS8	ATP5G3	ATP5O	SDHD	NDUFA5	ATP5F1	ATP5G2	NDUFB2	BCL2L1	COX7A2L	NDUFA7	NDUFB5	ZNF183	NDUFS1	COX8	UQCRH	COX6C	NDUFA8	PET112L	SDHB	NDUFB3	NDUFS4	NDUFA9	COX4I1	ATP5L	NDUFS6	COX6A1	COX7C	CNOT7	NDUFB1	NDUFA3	COX7A2	ATP5H	SURF1	NDUFS5	ATP5G1	SDHA	SURF2	NDUFA4	COX7B	GRIM19	COX10	SDHC	COX6B	NDUFS3	HSPC051	UQCRC1	COX11	ATP5E	ATP5D
Wnt_Signaling	BioCarta	WNT10A	WNT4	FZD8	WNT5A	WNT10B	WNT2	WNT3	PRKCZ	PRKCE	CTNNB1	MYC	FZD10	PPP2R5C	GSK3B	FZD9	SFRP4	PLAU	PRKCA	AXIN1	WNT2B	PRKCM	MAPK10	WNT5B	TCF7	FZD3	RAC1	CCND2	JUN	WNT7A	PRKCH	FZD5	CCND1	PAFAH1B1	FZD6	APC	FRAT1	PRKCQ	CSNK1E	DVL2	WNT7B	DVL3	WNT11	DIPA	PRKCG	MAPK9	FBXW2	PRKCD	PPP2R5E	DVL1	FZD2	WNT6	CCND3	PRKCI	ARHA	WNT16	LDLR
wntPathway	BioCarta	MADH4	MAP3K7	CTBP1	WNT1	MAP3K7IP1	CCND1	HDAC1	CSNK1D	APC	CTNNB1	FRAT1	MYC	GSK3B	NLK	TCF1	BTRC	AXIN1	WIF1	TLE1	PPARD	FZD1	CSNK2A1	CSNK1A1	DVL1	PPP2CA	CREBBP
FA	Manually Curated	ACADL	HADH2	DCI	FACL2	ACAA2	HADHB	NBS1	DECR1	ECHS1	ACADM	384D8-2	HADHA	CPT1B	BC002942	CPT1A	ACADVL	CPT2	ACAT1	CRAT	ACADS	AMACR	ACADSB	HADHSC
GLUCO	Manually Curated	PFKM	FBP2	GPD2	MDH1	ALDOB	PGK1	ALDOA	ENO1	ENO2	LDHB	ME3	ENO3	PCK2	GPD1	LDHA	GAPDS	ME1	MDH2	GK	CD4	TPI1	LDHC	GPT	PC	GPI	GRCC9	PCK1	ALDOC	PGAM2	ME2	BID	FBP1
GLYCOGEN	Manually Curated	AGL	PPP1R3A	PYGM	GSK3B	SLC37A4	PPP1CC	KIAA1026	PPP1CB	GYG2	GYS2	PYGL	PPP1CA	GYG	C20orf177	PPP1R2	GYS1	G6PC	GBE1	GAA	GCKR	PHKA2
GLYCOL	Manually Curated	PFKM	GAPDS	FBP2	HK1	PKM2	ALDOB	PGK1	CD4	TPI1	ENO1	ALDOA	PFKFB2	PGM1	GRCC9	PFKFB1	GPI	ENO2	ENO3	ALDOC	PGAM2	BID	FBP1
GO_0005739	GO	DCI	OKL38	FIBP	ATPIF1	NME4	MTHFD2	TK2	ATP5J	PDHA1	CPT1A	PCK2	ACADS	COX5A	ATP5C1	DLD	PDK1	BCKDK	ALDH2	MTERF	NGFRAP1	SOD2	PDHX	COX7A1	GPX4	CKAP1	SUPV3L1	MUT	SLC9A6	CPT1B	UCP3	ACATE2	BCAT2	FARSL	FPGS	POLG	BCL2L1	CRY1	BID	CPO	ACADL	DUT	MTIF2	ACP6	COX8	CYP27A1	GLYAT	GATM	PET112L	GOT2	PRSS15	GCDH	ENDOG	SLC25A14	IDH3A	ACAT1	CASP8	PDK3	CNOT7	MTHFD1	ACADSB	COQ7	NFS1	UCP1	FARS1	ACAA2	SLC25A12	CLPX	NBS1	CPS1	CS	OTC	SLC25A13	IDH3B	BDH	CYP11B1	COX7B	COX11	ME2	ATP5E	BNIP3L	DNASE2	PCCA	TUFM	CYP11A1	DLAT	GA	KIAA0963	DECR1	IDH2	PCCB	CA5B	PDHB	HADHA	HSPA9B	ARG2	BCKDHB	HAX1	CYP27B1	FH	DGUOK	NOC4	SSBP1	COX15	CKMT1	OAZIN	HADHSC	ACO2	HMGCS2	BCKDHA	FRDA	CA5A	NFKBIL2	DHODH	SUCLG1	CYB5	ACADM	ETFA	IVD	ATP5B	384D8-2	CYC1	CYCS	MTRF1	BC002942	DBT	AFG3L2	SDHD	ATP5F1	WARS2	DIABLO	CLN3	GPD2	PDK4	HADHB	DKFZP586D0919	SLC25A3	PMPCB	SHMT2	SLC25A16	NDUFA8	SDHB	NDUFB3	OAT	AMT	ACADVL	GLUD1	MIPEP	CYBB	COX7A2	SPG7	ECHS1	SDHA	POLRMT	GLUD2	NT5M	FDXR	PC	CKMT2	PDCD8	STAR	SDHC	MRPS31	CRAT	CYBA	SAST	SLC25A4	PPOX	AMACR	FDX1	TXNRD2
GO_ROS	FO	FOXM1	CDT6	MTL5	SOD1	AOX1	L3MBTL	SGK2	DUSP1	MSRA	STK25	GPX3	ATOX1	PDLIM1	OSR1	GSS	NCF1	SOD2	CCS	PRDX2	CCL5	SCARA3	LTC4S	SEPP1	RPS6KA5	MPO	CYBA	NUDT1	NCF2
human_mitoDB_6_2002	Manually Curated	HCLS1	BZRP	FIBP	ATPIF1	MRPS10	UQCRC2	SLC25A11	ACADS	DLD	SHMT1	PDK1	NGFRAP1	MRPS33	SOD2	AK3	GPX4	ACATE2	FARSL	AKAP1	SLC25A15	BCL2L1	CRY1	TXN	DIA1	PYCS	DUT	ZNF183	GATM	FRAP1	MRPS18A	PRSS15	NDUFA9	TOMM34	PDK3	ATP7B	ACADSB	FARS1	HSPE1	SUCLA2	ACAA2	ATP5H	MRPS30	CS	TIMM10	SLC25A13	BDH	CYP11B1	ACAD8	TK1	COX11	BNIP3L	APAF1	MCSP	DNASE2	TUFM	GA	MRPS16	CA5B	HADHA	MRPS28	SLC25A21	MRPS35	RPL3	SSBP1	NDUFAB1	COX15	NDUFB7	UQCRB	HADHSC	BCS1L	CYB5	MRPL11	CYCS	AFG3L2	ATP5F1	WARS2	TFB1M	STARD3	TOMM20	CLPP	SLC25A17	MCCC1	NDUFB5	NR3C1	NDUFS1	HSD3B2	SLC25A5	MRPL15	UQCRH	NDUFB3	POPDC2	OGG1	MRPL13	NDUFB1	SPG7	COX7A2	TIMM9	GSR	ECHS1	HMGCL	VDAC3	RPLP2	MRPL19	MRPL49	PC	MRPS31	PTPRA	DCI	NDUFS2	OKL38	MRPS15	ETFDH	SARDH	UQCRFS1	NDUFB8	MTHFD2	ATP5J	PDHA1	FACL4	LARS2	ABCB6	CPT1A	GALR3	MGC40084	COX5A	HSD3B1	BCKDK	FACL2	TST	NDUFS8	SUPV3L1	MUT	ATP5G3	UCP2	FPGS	MRPS18C	FACL5	BID	CPO	MTCH2	CYB5-M	BNIP3	GOT2	PLAB	GCDH	NDUFS4	RPS3A	SCP2	COX4I1	MRPL35	ATP5L	CASP8	COX6A1	COX7C	CNOT7	GRID2	TOMM70A	MRPL2	GCK	MDH2	TIMM44	ABCB8	NBS1	IDH3B	MRPL4	COX10	MRP63	GCAT	ODC1	MSCP	ATP5J2	TIMM8A	NDUFC2	CYP11A1	TIMM17A	PCCB	ARG2	HSPA9B	MBD3	TRAP1	FH	TOMM40	CKMT1	NDUFA6	HMGCS2	FRDA	BCKDHA	NFKBIL2	PRDX3	SUCLG1	ACADM	ETFA	IVD	MRPL33	MTRF1	ABAT	MAOA	SDHD	IMMT	TFAM	TAT	C2orf3	BLVRA	MRPL42	SLC25A3	NDUFA8	AKAP10	MRPS7	SDHB	OAT	MFN2	AMT	TIMM23	HSPA1A	ACADVL	GLUD1	CYBB	NRF1	ATP5G1	NDUFA4	SLC25A1	OXCT	FDXR	GPT	STAR	COX6B	SAST	MRPL39	TXNRD2	OPA1	NDUFA10	TK2	MRPL48	MRPS27	ZNF11B	PPM2C	HTATSF1	HCCS	ATP5C1	HK1	ALDH2	MTERF	MRPS17	CKAP1	C10orf28	BAK1	SLC9A6	UCP3	SLC25A10	MPO	MUTYH	NDUFB2	POLG	COX7A2L	ABCF2	CYP11B2	MTIF2	GLYAT	COX8	MRPS18B	COX6C	EFG1	SLC25A14	ACAT1	ALAS1	SLC25A12	CLPX	SLC25A20	OGDH	NNT	TIMM13	ATP5E	ME2	PPIF	CST	DLAT	IDH2	PDHB	BCKDHB	HAX1	MRPL12	NDUFB6	CYP27B1	DGUOK	NDUFB4	CA5A	BCL2A1	DHODH	COX5B	ATP5B	MRPS34	BC002942	GLS	MPST	MRPL46	BCL2L11	MRPL18	HADHB	DKFZP586D0919	PMPCB	SHMT2	SLC25A16	MRPL20	BAX	NDUFS6	OXA1L	ALDH4A1	SURF1	VDAC2	MRPL44	MRPS11	POLRMT	TXN2	PIN4	MRPL16	NDUFV2	UQCRC1	SLC1A3	FDX1	IDH3G	ATP5D	AGXT	NME4	LYPLA2	CASQ1	ABCB7	NDUFA2	HSPD1	PCK2	CYP24A1	ATP5S	IVNS1ABP	COX6A2	ATP5I	FACL6	NDUFS7	PDHX	COX7A1	TOMM22	CPT1B	BCAT2	PPID	MRPL17	MRPS14	POLG2	ACADL	ACP6	CYP27A1	PET112L	MRPL34	DAP3	ENDOG	MCFP	SDS	IDH3A	MTCH1	MTHFD1	COQ7	UCP1	NFS1	RAF1	GOT1	CPS1	OTC	DNM1L	COX7B	PYCR1	MLH3	NDUFS3	HSPA1L	AK2	PCCA	KIAA0963	DECR1	TIMM17B	CPT2	ME3	UQCR	NOC4	OAZIN	ETFB	ACO2	SLC25A28	SLC1A1	BCL2	HLCS	MRPS12	NDUFC1	384D8-2	CYC1	DKFZP566E144	DBT	ATP5O	NDUFA5	ATP5G2	UROS	FECH	CLN3	DIABLO	C10orf6	GPD2	MRPS2	PDK4	NDUFA7	MRPS22	DLST	MAOB	MIPEP	NDUFA3	NDUFS5	TIMM8B	MRPL22	TIMM22	SDHA	GLUD2	CKMT2	BAD	PDCD8	FACL3	SDHC	CRAT	MRPL9	CYBA	MRPL24	AMACR	SLC25A4	PPOX	MFN1
INS	Manually Curated	PIGF	SOS1	FLOT2	CRK	PRKAR2B	AKT1	PTPN1	FLOT1	NCK1	INSR	PIK3CB	PRKCZ	IRS1	PDPK1	AKT2	FLJ23042	CBL	ARHQ	INPPL1	IRS4	SORBS1	CD4	IGF1	PTPN6	PIK3R3	NCK2	GRF2	PTEN
KET	Manually Curated	OXCT	BCKDHB	HMGCS2	BCKDHA	LYPLA2	ACAT1	HMGCL	BDH
mitochondr	Manually Curated	BZRP	FIBP	ATPIF1	MRPS10	FLJ20859	UQCRC2	POLR1B	PEO1	SLC25A11	ACADS	CAD	DLD	PDK1	NGFRAP1	MRPS33	SOD2	AK3	GPX4	ACATE2	PKLR	FARSL	SLC25A15	BCL2L1	CRY1	CABC1	DIA1	DUT	ZNF183	GATM	MRPS18A	PRSS15	TOMM34	PECI	PDK3	ACADSB	DKFZP434N1235	FARS1	HSPE1	ACAA2	ATP5H	MRPS30	SLC1A2	CS	TIMM10	SLC25A13	BDH	CYP11B1	TFB2M	G6PD	ACAD8	CASP2	COX11	BNIP3L	LCAT	APAF1	BIK	MCSP	DNASE2	TUFM	GA	MRPS16	CA5B	HADHA	MRPS28	SLC25A21	MRPS35	SSBP1	NDUFAB1	COX15	NDUFB7	UQCRB	HADHSC	BCS1L	MAP3K1	CYB5	MRPL11	CYCS	AFG3L2	CGI-04	ATP5F1	WARS2	TFB1M	STARD3	TOMM20	SLC25A17	NDUFB5	NR3C1	NDUFS1	SLC25A5	MRPL15	UQCRH	NDUFB3	POPDC2	TNFRSF5	MRPL13	NDUFB1	GNLY	SPG7	COX7A2	TIMM9	ECHS1	HMGCL	VDAC3	MRPL19	MRPL49	PC	MRPS31	PTPRA	C15orf12	DCI	NDUFS2	OKL38	MRPS15	SARDH	ETFDH	UQCRFS1	NDUFB8	MTHFD2	ATP5J	PDHA1	LARS2	CPT1A	Magmas	MGC40084	COX5A	MB	BCKDK	FACL2	TST	NDUFS8	SUPV3L1	MUT	ATP5G3	UCP2	LGALS3	FPGS	MRPS18C	BID	CPO	MTCH2	CYB5-M	VAV1	YWHAE	ERBB2	GOT2	GCDH	NDUFS4	EHHADH	COX4I1	MRPL35	ATP5L	CASP8	COX6A1	COX7C	CNOT7	TOMM70A	MRPL2	GCK	C1QBP	MDH2	TIMM44	ABCB8	NBS1	IDH3B	MRPL4	COX10	MRP63	MSCP	ATP5J2	TIMM8A	NDUFC2	CYP11A1	TIMM17A	PCCB	ARG2	HSPA9B	MBD3	FH	PRSS25	TOMM40	CKMT1	NDUFA6	HMGCS2	FRDA	BCKDHA	NFKBIL2	PRDX3	SUCLG1	ACADM	ETFA	IVD	MRPL33	FXC1	MTRF1	ABAT	MTX1	MAOA	SDHD	IMMT	TFAM	TAT	C2orf3	P53AIP1	MRPL42	SLC25A3	NDUFA8	MRPS7	SDHB	OAT	C16orf3	MFN2	AMT	TIMM23	ACADVL	GLUD1	CYBB	ATP5G1	NDUFA4	POR	SLC25A1	FDXR	STAR	COX6B	GNAS	SAST	MRPL39	TXNRD2	RPC2	NDUFA10	TK2	MRPL48	MRPS27	CYP2E1	ZNF11B	HTATSF1	DCTN6	HCCS	ATP5C1	PLA2G1B	HK1	PYGB	ALDH2	MTERF	MRPS17	TNFSF10	CKAP1	BAK1	C10orf28	SLC9A6	UCP3	SLC25A10	MPO	NDUFB2	CDC42BPB	POLG	ABCF2	CYP11B2	ADCK2	MTIF2	MT	GLYAT	COX8	MRPS18B	COX6C	MRPL41	EFG1	SLC25A14	ACAT1	CAT	ALAS1	SLC25A12	CLPX	SLC25A20	NNT	TIMM13	ACAA1	ATP5E	ME2	SLC30A9	SHB	DLAT	IDH2	PDHB	YME1L1	BCKDHB	HAX1	MRPL12	NDUFB6	CYP27B1	DGUOK	SLC25A22	NDUFB4	CA5A	BCL2A1	DHODH	COX5B	ATP5B	MRPS34	BC002942	CYP20A1	MPST	MRPL46	MRPL18	HADHB	MTX2	MTO1	DKFZP586D0919	PMPCB	SHMT2	SLC25A16	MRPL20	MYCBP	BAX	NDUFS6	C20orf14	OXA1L	ALDH4A1	SURF1	VDAC2	MRPL44	MRPS11	POLRMT	TXN2	PIN4	C14orf2	MRPL16	PRKCD	NDUFV2	UQCRC1	SLC1A3	ATP5D	FDX1	NME4	LYPLA2	CASQ1	ABCB7	NDUFA2	PP	HSPD1	PCK2	ATP5S	COX6A2	ATP5I	PDHX	ATPAF2	COX7A1	TOMM22	SNCA	CPT1B	BCAT2	PLA2G2A	TP53	MRPL17	C21orf2	MRPS14	POLG2	ACADL	ANXA7	MGC2615	SIRT4	ACP6	CYP27A1	PET112L	NME2	FLJ10618	MRPL34	DAP3	ENDOG	MCFP	IDH3A	MTCH1	MTHFD1	COQ7	UCP1	NFS1	RAF1	RAN	CPS1	MRPL3	OTC	APP	DNM1L	COX7B	CROT	PYCR1	NDUFS3	AK2	GRB10	PCCA	KIAA0963	DECR1	ECGF1	CYP7A1	TIMM17B	ME3	UQCR	MRPL28	NOC4	OAZIN	ETFB	ACO2	SLC25A28	SLC1A1	BCL2	MRPS12	NDUFC1	CYC1	384D8-2	DBT	ATP5O	NDUFA5	CNNM4	ATP5G2	FECH	FAM3A	CLN3	DIABLO	C10orf6	GPD2	MRPS2	PDK4	NDUFA7	MRPS22	MAOB	MIPEP	NDUFA3	NDUFS5	TIMM8B	MRPL22	TIMM22	SDHA	FLJ20551	GLUD2	NT5M	TPO	CKMT2	MFTC	PDCD8	SDHC	CRAT	MRPL9	CYBA	FLJ20399	MRPL24	AMACR	SLC25A4	PPOX
PGC	Manually Curated	PYGM	MUC5AC	DNAJD1	DKFZp434O0213	NDRG4	PHYH	HSPBP1	NR0B2	HSPA5	SLC25A11	ACADS	DLD	SHMT1	HADH2	MNDA	NME7	NGFRAP1	GABARAPL1	SOD2	RAMP3	GPX4	GHITM	CHP	GNA13	AKAP1	HMGB3	FLJ13612	PIB5PA	USP8	FRAP1	ERO1L	MRPS18A	PRSS15	MRPL40	TARBP1	MAP2K1	ABCF1	HSPC132	FXR2	KCNN1	FARS1	HSPE1	SUCLA2	ME1	CS	CTSF	MYH11	PSMB7	MDS029	TFB2M	SF1	GPI	SCN1B	MT2A	CARHSP1	DBI	BNIP3L	TUFM	CKS2	PGK1	GTPBP2	ENO1	LRBA	NCAM1	COPS3	NDUFAB1	DHX16	UQCRB	FLJ22555	NOLA3	UBE2B	MRPL11	CYCS	TCIRG1	SRC	FLJ10511	CLPP	PUS1	ATP5A1	TBL1X	NDUFB5	PGAM1	SLC25A5	MRPL15	C6orf209	LATS1	NDUFB3	POPDC2	ATP1A1	UPP1	MRPL13	TCN2	COX7A2	HSU79266	MPP5	VDAC3	HBA1	PGM1	LPIN1	AES	DFFA	FAM18B	MTHFD2	PDHA1	SPTLC2	ULK1	NSF	ITPR2	PSMA6	CPT1A	FLJ20758	ITPK1	KIAA0103	MARS	H11	HLA-DRA	PTK9L	PFKP	SUPV3L1	PTGES2	EDNRA	EEF1A2	E2IG5	GRCC9	DOM3Z	PCK1	MGC4276	BID	IFRD1	MTCH2	HBD	CX3CL1	VIPR1	CGI-128	GCH1	PTDSR	PLAB	GCDH	SLC20A1	ATP5L	PSMB10	COX6A1	COX7C	S100A1	CNOT7	MDH2	UBC	F2RL2	GSS	STARD7	TIMM44	GK	FZD4	ARMET	AK1	MRPL4	TMX2	RXRB	C9orf16	LCN7	POLR2E	TIMM8A	FOXM1	TIMM17A	HSPA9B	PDGFRB	PMM1	FH	SCD	TOMM40	BAT3	NDUFA6	S100A13	PRDX3	SUCLG1	USP2	ACADM	FXC1	DPYSL3	MTX1	RRM2	TFRC	SPINT1	SPP1	AGPAT3	RNF5	RTP801	DDT	DRPLA	GRPEL1	REA	NDUFA8	SDHB	RAB31	TIMM23	SGTA	LDHB	SZF1	CPR2	PHLDA1	DUSP1	PKM2	MGC5139	SPUVE	TNNI3	RPA3	OXCT	PDIP38	APBA3	KIAA0033	MGC29816	FLJ22390	MAPKAPK2	KIAA0205	UROD	LSM1	RANGNRF	EIF4A2	GRSF1	MRPL39	UMPK	ABCA2	DGAT1	ZNF11B	MKRN3	C7orf32	SIAT7D	GOLPH3	SARA2	HCCS	ATP5C1	NRP1	GLRX	VAMP8	MRPS17	RTN4	TM4SF12	STK19	ACYP1	GYS1	DUSP6	SOD3	ADSL	PDCD6	AKIP	COX8	MRPS18B	SKIV2L	EFG1	EIF3S6IP	ABHD5	FLJ10134	HRI	FLJ12598	GTF2H4	CDKN2D	RAB40C	ALAS1	MGC15396	TSC2	SLC25A20	CRLF3	REC14	TIMM13	IFI16	TTC1	ZNF216	CKIP-1	UBL1	NDRG2	IDH2	COH1	C20orf45	PDHB	DNAJA3	CIA30	NDUFB6	AKR1B10	BACH	SACM1L	LCN2	ESRRA	ACTR2	STK16	MO25	COX5B	MRPS34	C21orf97	SH3BGR	ARHD	LRRFIP2	MRPL46	MRPL18	COMT	HADHB	MTX2	DKFZP586D0919	CRMP1	MRPL20	COL7A1	NPPB	P4HA2	THEM2	FASTK	PLA2G12	PCOLCE	RANGAP1	PGLS	GAPD	TXN2	VIP32	C14orf2	NDUFV2	FOS	UQCRC1	GBAS	FDX1	IDH3G	ADSS	ALS2CR3	ARVCF	SLC2A4	SMPD1	HSPD1	LSM8	UNG	PSCA	PTPRD	PPM1G	RRM1	COX7A1	MAL	ICT1	POLR2F	SLC31A1	ID2	RUVBL2	PIGQ	ACADL	LRPPRC	GATA3	PSMB5	DC13	SLC12A7	PDXK	OSBPL1A	FLJ11560	MYL2	LRP5	MRPL34	SNW1	PSME3	IDH3A	NFS1	NFYC	PTDSS2	FBS1	HUMPPA	CA4	KIDINS220	MGC10940	ACYP2	MGC3047	COX7B	C14orf87	INHBA	NFIX	CA2	ATP6V1D	APG-1	NDUFS3	NINJ1	HSPC051	LOC123803	PFKM	CHRNE	ECGF1	GABPA	GTPBP4	FLJ10420	OAZIN	LDHA	ETFB	ACO2	SAT	GAF1	PCTK3	MRPS12	MAT2B	EGLN1	NDUFC1	CYC1	VEGF	ATP2A3	CMKOR1	ATP5O	NDUFA5	FABP3	MAPK8	MRPS2	PDK4	GSTO1	ARIH1	SEPX1	GUK1	DKFZP564B167	CIAO1	PCYT2	NDUFS5	BSG	TIMM8B	MAP2K3	SDHA	TPI1	PSMA5	PRDX2	ATP1B1	CKMT2	PDCD8	DNAJB9	CRAT	CDC34	AMACR	SLC25A4	MFN1
PYR	Manually Curated	PPM2C	PDK1	PDK4	PDHA2	PDHX	PDK3	PDHA1	PDHB
ROS	Manually Curated	GPX1	ZNF11B	PRDX3	KIAA0963	SOD2	GPX4	PRDX6
TCA	Manually Curated	ACO2	SUCLA2	MDH2	SUCLG1	CS	IDH2	SDHA	SDHB	OGDH	IDH3B	SDHD	IDH3A	FH	SDHC	IDH3G
shh_lisa	Manually Curated	PRKAR2A	GSK3B	GLI	PRKACB	XPO1	CDK2	RASGRF1	PRKAR2B	BMP2	GLI2	DYRK2	CDK8	PRKACG	FGF4	DYRK1A	PTCH	CCNB1	GLIPR1
MYC_WT	Myc wild type	UQCRC1	YPEL1	KCNJ10	ACTR2	KIAA0652	SIRT2	CASK	ZNF333	VPS45A	IVNS1ABP
MYC_MUT	BLACK	NNMT	HEAB	GSS	RAN	TIPARP
INSULIN_2F_DOWN	Rome_et_al_2003	CYP4A11	MSH5	B1	TGFB2	KIAA1117	C10orf10	CNTN2	PRKR	CPA1	ELA3A	CLTB	MLL	BRD4	CRYBA4	FLJ10815	NIN	APCL	CDC16	TCL6	PCDH17	BCL10	KIAA0746	TOX	MAD	C6orf4	ALMS1	FNBP3	TGM3	BCLG	SH2D3C	SERPINA1	PRKX	TRAD	FBXL6	KIAA1430	MMP23B
INSULIN_2F_UP	Rome_et_al_2003	MSI2	PC4	UK114	FHL3	HK2	YWHAH	ASH1L	KARS	CANX	PPP2R3A	SCA1	GLRX	SARCOSIN	PXMP3	ZNF9	LSM3	PAM	YWHAQ	PPP1R2	GNPDA1	IFIT1	ARCN1	ATP6V1E1	HNRPDL	VDAC1	ASCL1	NRD1	SNAPAP	TSG101	ADSL	LAPTM4A	SUI1	PSARL	SCOC	DNCL1	NFE2L1	PTP4A1	WBSCR1	UBE2E3	FLJ11506	AHSA1	UBA2	CDK2AP1	H2AFZ	SLC25A12	BUB1	TRIM32	NP220	SDBCAG84	ACP33	SH3GLB1	SET	SPS2	CLNS1A	UBB	TIP120B	CCL16	GNPAT	GL004	FLJ11021	COPS5	RBX1	USP9X	UBL1	PRO2730	MRPS16	QARS	VPS29	HNOEL-iso	ZNF44	AKAP6	PAIP2	SPARCL1	MGC5508	CRI1	ORF1-FL49	HADHSC	CAMLG	STS	OSR1	NT5C3	UBE2B	PTMA	CMAS	FAM16AX	HECTD1	IL13RA1	EIF2S2	SORBS1	NIFU	ARPP-19	PURB	FEM1B	IPO7	AHCYL1	PGAM1	PSMD13	SDCBP	UBQLN1	ALDOA	VIM	EEF1G	SNRPB2	OXA1L	SERPINF1	ADFP	COX7A2	PDE4D	HSF2	GYG	GCN1L1	UBE2I	GMPR	RPLP1	GBAS	NPM1	ITGAE	CSDA	CD36	PSMD14	FNTA	TIMP3	TALDO1	HERPUD1	JTV1	HDGF	C21orf7	TAF7	PRDX1	S100A7	PSMA6	CAPN2	TERF2IP	MGC21854	C1S	PPP1R12A	H11	FACL2	ALS2CR2	VCL	TCTEL1	CL640	ZAK	NACA	CLECSF2	BTF3	PSMB4	ADHFE1	TM4SF2	PLN	FBP2	IHPK3	ANXA7	TM4SF3	MTCH2	G3BP	DC13	UACA	LAMR1	GOT2	GPSN2	NDUFS4	MAP4	MORF4L2	UGP2	STARD7	ACYP2	C17orf35	RNP24	ARF4	GTF2A2	HBB	SYNPO2L	H2AV	ODC1	MAT2A	ST13	YWHAG	USP22	C20orf108	PABPC4	VCP	GSTA4	PRDX6	CLCN3	NCKAP1	FLJ20533	UBE3A	HGRG8	KIAA0830	RPL7A	DREV1	MGC2963	HSPC155	FLJ13456	RPL41	CFL2	USP16	SLC39A14	DPYSL3	SPOP	TPM1	DAG1	PSMA4	ARIH1	CCT8	RNF10	ATP6V0B	EPM2A	LDHB	LMCD1	LAPTM4B	UBE2V2	SLC35B1	MAOB	HSPC016	CD59	DDX1	MGC2452	SRP14	NFIA	OXCT	RPS20	AKR1C2	PGRMC2	DDX48	HLA-C	RAB5A	BCL2L2	PUM2	LARGE	PSMA3	C3orf1	FLJ10081	ACTB
NFKB_INDUCED	Hinata_et_al_2003	SPRR1B	WNT5A	MAP1B	RELA	ABCC1	CTSE	SOD1	CCL2	CXCL5	CFLAR	TNF	PLAU	IL1B	SOD2	FGF5	MSC	RABEP1	RAC2	STAT5A	IRF1	ARHGDIB	RAC1	GCH1	GADD45A	CXCL10	IFNAR2	GTF2H4	IL7R	CDH2	BTN3A3	CXCL11	KRT14	GPR37	SLC7A2	GABBR1	KRT10	PMSCL1	IL8	MAPK9	PTX3	TIAM1	SERPINB2	ICAM1	CCNB1	TAP1	IL6	CXCL6	ESM1	ADAMTS3	FN1	MMP9	EDN1	CYP27B1	ITGB6	MYBL1	SPTBN1	EFNA1	SERPINE1	SELE	ETS1	CDH3	TNC	BCL2A1	XPC	OLR1	SAA1	TNFAIP2	NPR1	IL1RN	PNRC1	GBP1	RARRES1	RELB	SEC24A	MMP14	WFDC2	KRT6B	IER3	NK4	CXCL3	BMP2	IL15	IL1A	PLAT	CSF2	FGF2	TNFAIP6	CD83	MMP1	ARHE	KIAA0608	HGFAC	ARF6	NFKB2	CXCL1	UTX	KRT7	TNIP1	ERCC1	RPA2	CXCL2	MAP2K3	AP2B1	CCL5	CPNE5	CD9	NFKB1	LITAF	CCL20	TAF15	CDKN1A
NFKB_REDUCED	Hinata_et_al_2003	HYAL1	DUSP4	RIMS2	C4BPA	DAPK1	RAI3	KLK6	RUNX1	PPL	UPK1B	SULT2B1	THBS1	DSG3	SCEL	INA	KIAA0350	CEACAM6	KLK7	ZNF185	RGS2	PTHLH
EMT_UP	Jechlinger_et_al_2003	ADSS	DCN	MTHFD2	PDGFRA	DDR2	SPARC	ADA	VLDLR	PROCR	PDGFRB	CD68	S100A8	CXCL5	PTGS1	MMP2	IRF7	BCL3	GBP3	GALK1	TNC	COL6A2	CYP1B1	CDH15	MMP12	CMKOR1	HIF1A	PRSS11	G1P2	RRAS	IFIT1	B2M	SLC3A2	SRM	SNAI1	SLPI	MMP13	PLA2G7	PPIC	VIM	RNASET2	CDH2	PMP22	GAS1	UPP1	CXCL1	IFITM3	PCOLCE	DAB2	PHGDH	SDC2	STAT1	CTSZ	INHBA	IL11	FMO1	COL6A1	ASNS
EMT_DOWN	Jechlinger_et_al_2003	FBP2	HMMR	BCL6	FLNA	STAT5A	ATF3	MYH9	FOSB	TIMP3	RARA	IRF6	AMD1	F3	PKP1	EGR1	TGM2	ATP1A1	DUSP1	ITPR1	SGK	CTGF	KITLG	SERPINB5	ACTN4	NUMB	JUP	VAMP8	PADI2	KLF2	TACSTD1	TGFB3	ARHGEF1	NNT	THBS1	CDH1	TIAM1	GRB7	ITGB5	CTSH	EGR2
HTERT_DOWN	Smith_et_al_2003	ALDH7A1	PON2	NME4	IDI1	HEAB	GM2A	ABR	ALDH3A2	PTPNS1	PCOLN3	RAB11A	SORD	KYNU	FAH	STAT4	POU5F1	TST	TNFSF10	SAA1	A2M	PAM	ASAH1	IL1RN	GPRK5	DNA2L	ATP5O	TAGLN	PIK3R3	PML	RIG	VAV2	DUSP6	KIAA0140	CCNG1	GSTO1	DHCR24	UNC119	CALML3	FOSB	ARHGDIB	GSN	AKT1	SRD5A1	PPP1R7	TNFSF9	SERPING1	EHHADH	VSNL1	AHCY	CBR1	RRAGA	CD47	UGP2	TRADD	XRCC5	TUBB4	PCNA	APEG1	ACLY	AKR1C3	GAMT	ANKRD15	PGF	ANXA4	TCF4	RAB40B	NID2
HTERT_UP	Smith_et_al_2003	ATF3	LMO4	ch-TOG	SFRS11	MTHFD2	ZNF165	HERPUD1	CCNH	ZNF274	ILF2	PSMD11	HYOU1	ZFP36	MADH1	AHR	MARS	CDC6	DAF	MGEA6	TCTEL1	TOP1	PSMD4	ICT1	NFX1	DR1	DYRK4	SLC33A1	NFIL3	CREBBP	IFRD1	RBM10	TSG101	LHFPL2	CEBPG	TGIF	ETV6	CCNA1	MCFD2	TOMM34	SRP19	NEK3	KIAA0063	GOT1	GSS	CBX5	GK	STE	MAPK9	R3HDM	GATA6	A2LP	PYCR1	DYRK1A	DAP	C11ORF4	XBP1	ASNS	RAE1	ELF4	EIF2S1	PSMD7	CTH	ALKBH	AARS	PCCB	MICA	GFPT1	KIAA0073	IL13RA2	DGUOK	CDKN3	CBLB	EPHA2	TNC	XPC	WASF1	RPP30	MLH1	MADH7	IL10RB	COVA1	EPS8	CDKN2A	KIAA0092	SNRPA1	NPC1	BCL7B	SH3BGR	EGFR	CLPP	PLEKHC1	SCYE1	ADAM8	BMP2	H1FX	FGF2	SLC1A5	PPP1R11	PIGH	KLF5	DUSP1	DDX10	GTF2E2	HNRPD	EWSR1	CXCL2	STK3	NUP88	HSF2	PPP2R2A	TRPC1	MRPL49	NFKB1	TCEA1	RDBP	DCTN2	HUMAUANTIG
ANTI_CD44_UP	Hogerkorp_et_al_2003	SERPINC1	CAMK2D	CDKL5	RGS3	ATP1A2	MAPK14	ECGF1	IL1A	MLLT3	STX1A	SOX5	ADRB2	AQP1	PLG	SH3BP2	IF	ALB	AFAP	PYGL	C18B11	GCNT2	PDE6A	PIGA	MITF	NBL1
ANTI_CD44_DOWN	Hogerkorp_et_al_2003	GUCY2F	SERPINA1	HLCS	PRDM2	PALM	EPHB3	SSTR4	MLLT10	APC	PLS1	LAMP2	SLC14A1
HOXA9_DOWN	Dorsam_et_al_2004	IGF2	WSB1	CD36	JUNB	KRT18	SFRS11	GATA2	MAN2A2	CDC37	SBNO1	SERPINB9	JUN	SDCBP	TPR	USP1	RBBP6	LYZ	S100A8	SDC4	ARNTL	DSIPI	MYC	FPRL1	FCGRT	GLRX	SRP72	TRAP240	LYN	DCT	BMI1	HBE1	NFIA	CLCN7	VHL	OSBPL8	FXR1	CISH	DNCLI2	YWHAG
P53_UP	Kannan_et_al_2001	ABCA3	ADFP	APLP1	ATF3	BAK1	BAX	BBC3	BCL6	BTG2	CDKN1A	CES2	CSPG2	CTDSP2	DDB2	DGKA	ENG	EXT2	FEZ1	FHL2	GADD45A	HAN11	IGFBP6	KIAA0247	LCAT	MAN2B1	MDM2	NDN	NHLH2	NINJ1	PCNA	PLK3	PMAIP1	POMZP3	SCGB2A2	SCRIB	SMTN	SURF1	TMSNB	TNFRSF6	ZNF7
P53_DOWN	Kannan_et_al_2001	APBA2	ARL4A	BIRC3	C4orf9	CCNE1	CDC6	COL18A1	CPM	CXADR	EIF4A1	FOSL2	INA	MAC30	PMP22	PPAT	PURA	ARL5	BRCA1	GOS2
RAP_UP	Peng_at_al_2002	H2BFS	BART1	PLTP	PDK2	DOK2	ADA	CMRF35	IGL@	C5orf7	APS	CFLAR	DAAM1	TOP2A	CIRBP	H2AFX	EIF3S6	MYC	HIST2H2AA	CUTL1	EMS1	PDLIM1	ALDH2	JUND	SMAP	TAF10	MEG3	ATP6AP1	CD48	CD37	BRD8	HDAC5	BRF1	P8	TP53	LOC51035	ARHGAP1	C6orf80	UCP2	GCN5L1	MUTYH	IFIT1	POLD4	KCNMB1	LTA	ASCL1	PSG7	UBE2J1	BCL6	CCNG1	MS4A1	BCL7A	PRKCB1	TNFRSF1A	SLC35E2	ZFP36L1	IL2RG	GMDS	PPP2R5A	RGS10	STAT2	HLA-DQA1	IL4R	EDG5	CRHR2	CAMK1	GPX6	MAP4K2	CENPF	NOTCH4	MUSK	RQCD1	KIFAP3	KIAA0342	TBC1D1	GRINL1A	KIAA1536	hnRNPA3	GNB3	CLOCK	JAK1	IGHG3	HIST1H2BK	SPOCK2	PTK2B	TK1	LRMP	IGSF4	BNIP3L	PIK3CG	PTPN18	RW1	HMMR	SASH1	DRAP1	QSCN6	DDX46	HSRNAFEV	IDH2	ASS	BTG2	BASP1	TCL1A	TCF20	YF13H12	MGC2650	RGS13	IGLJ3	IFNGR2	HMG20B	ATP6V0A2	DMBT1	HAGH	C5orf13	HIST1H2BI	SSTR2	URKL1	CTDSP2	MS4A2	FKBP8	HMGCS2	RASGRP3	BC-2	FLJ13052	CBLB	BCKDHA	MYO1F	AP4M1	HLA-F	ATP2A3	EPS15	ROCK1	TAZ	CNAP1	UROS	RELB	LANCL1	TNFRSF7	POU2F2	HLA-DPB1	Rab11-FIP3	CD53	EPB49	FAIM2	IGHM	SLC25A6	PSCD1	AKR7A2	LY86	ACADVL	TNFRSF5	BRD3	RHBDL1	ACINUS	FANCG	RTN2	HIST1H3H	XK	FUCA1	KIAA0746	ENPP2	ERCC1	CDT1	TXNIP	SURF1	PTPRH	ARPC3	EVER1	HIST1H2BN	HMGCL	CSNK1G2	RPA3	KCNH2	HBP1	KIAA0076	MTMR2	HEC	POU2AF1	LKAP	CD22	DVL1	MDM4	GNG10	TOP3B	GMPR	TRO	SLC38A6	CRAT	RBMS3	LAPTM5	AES
RAP_DOWN	Peng_at_al_2002	UMPK	IFI30	RPS26	ETF1	RNU3IP2	PSMD11	PSMD5	HYOU1	HSPA5	ADRM1	HCCS	TARS	TRIP13	SF3A3	HADH2	SNRPC	DKFZP564F0522	ACAT2	NPM3	RTN4	FARSL	TRA1	TTS-2.2	EMP3	NXF1	PAPOLA	RABGGTB	AATF	WBSCR22	NDUFA9	CALU	FKBP4	AHSA1	PSMC2	CD47	CTSC	HSPE1	TCP1	FASN	HRMT1L2	EIF4G1	FNBP3	FLJ12443	MLF2	DDX21	LIMK2	COX11	RAB14	XBP1	PPIF	TGDS	PGK1	SLC29A1	KIAA0218	PSMD8	NOL5A	BYSL	ARF1	JTB	MRPL12	ATP6V0E	MGC5508	P5	KIAA0179	SSBP1	HSPC111	KPNB2	DKFZp434K1815	BCS1L	DNAJA1	FAM16AX	GCN5L2	CHERP	PIP5K1A	CYCS	SSA2	DDX3X	PTDSS1	HB-1	SNRPA1	SRM	CHC1	HSPA8	RTCD1	PITPNB	PGAM1	P2RX5	RBBP6	CCT4	MYCBP	SLC1A5	XPO6	CAPZA2	DDX19	CTPS	TDG	CSE1L	CCNC	RPP20	GORASP2	RNASEH1	ALDH4A1	CCT2	KIAA0007	BCAP31	YARS	PPP2R2A	EBNA1BP2	BTK	WDR18	PPIB	EXTL3	CDK4	AF1Q	PSMD14	GLO1	EIF2B4	WNT10B	NME1	ATF5	DPH2L2	C8FW	AMD1	PHB	NARS	PA2G4	MARS	UCHL1	RBP1L1	EIF3S9	FLJ11126	ATP5G3	ICT1	BMP1	EEF1E1	POLR2F	ATP6V0C	NUP98	ID2	RAB9P40	USP10	S100A4	SQLE	HBD	PSMB5	HSPCA	SIT	PTMS	RAB1A	GOT2	GCDH	DAP3	NMP200	RARS	IDH3A	MORF4L2	SLC7A5	POLR2B	GSPT1	TXNL	ATP1B3	C1QBP	NOL1	UBE2M	TIMM44	COPB2	ARMET	IDH3B	PTBP1	COX7B	RNP24	GTF2A2	NDUFS3	HBB	AK2	ASNS	RAE1	PFKM	UBE2L3	IDI1	VCP	TIMM17A	GM2A	KPNA3	ZNF259	HSPA9B	CCT6A	NP	C2F	TUBG1	CCT5	SCD	TOMM40	HSPCB	SREBF1	CHUK	PRDX3	CDC25A	MRPS12	STAU	ETFA	SYNCRIP	CYC1	SLC39A14	HSPA4	TFRC	MMP15	ZNF294	ACVRL1	SLC3A2	TEBP	EIF4G2	GTF3C1	DHCR24	SAFB	SDHB	KIAA0117	PTPN1	LOC84549	LDHB	GARP	PICALM	EBP	EIF2B2	INPP5E	MAPKAPK3	NMT1	PTRF	RNH
GLUT_UP	Peng_at_al_2002	PTPRT	DKFZp586I1420	HEXA	BART1	TRIO	SSH3BP1	LGALS3BP	CLN2	TOP2A	TARS	BHC80	MAP1LC3B	NDP52	PYGB	ALDH2	SMAP	LPP	AIM1	TYK2	ACTA1	VPS45A	BRD8	TERF2	HDAC5	STK19	BLK	C6orf80	CNIH	GCN5L1	C21orf33	POLD4	RBM5	UBE2J1	CCNG1	BCL7A	SERPINI1	RNPC2	EGFL5	VAPB	KIAA0725	SUI1	HRMT1L1	PPP2R5A	NFE2L1	RAB3GAP	ADD3	CUL4B	TES	BTG1	HMGB2	GLB1	OGT	PMAIP1	NOTCH4	TSC2	NIT1	PHGDH	SDBCAG84	PJA2	SF4	GNB3	PLCL2	IGHG3	KIAA0376	PQBP1	PRKCI	SLC30A9	SMARCB1	BNIP3L	CDS2	DKFZP547E1010	ATP6V0A1	RW1	LRP10	HOXC5	IDH2	AARS	GABARAP	NCF4	CLIC4	S100A11	BCKDHB	HAX1	IGLJ3	ENO2	HAGH	GRHPR	COL9A2	HADHSC	CTDSP2	GSTT1	BC-2	CBLB	SPAG9	NFIC	ZNF161	BACH1	SLC43A1	KIAA0907	SARS	BCL9	TNFRSF7	STXBP2	NR3C1	KIAA0053	KIAA0663	SLC1A5	HSF1	PSCD1	SIAH1	SLC1A4	IARS	P4HA2	DSIPI	LYSAL1	KIAA0746	SLC16A3	SURF1	BMI1	YARS	LY96	PSCD2	HSRTSBETA	TXN2	HEC	ACP1	FLJ21439	KIAA1055	DKFZP566A1524	ASMTL	DVL1	RDBP	TOP3B	PTPRA	CLASP2	GPLD1	JMJD2	SEC14L1	DOK4	VAMP3	DDX23	ATF4	ZNF297	MTHFD2	ATF5	ADA	SMTN	PTPRC	CPNE1	IGL@	APS	ITPR2	C6orf130	DAAM1	PCK2	CIRBP	GCHFR	CLASP1	RNF103	MARS	ATP5S	PPP3R1	HIST2H2AA	MEF2B	KDELR1	CUTL1	XPOT	ATPAF2	MGEA6	KIAA0635	CARS	FRAG1	CCNG2	BCAT2	ATRX	MEF2A	PLXNB2	MADH5	GNS	SNPH	LTA	APBB3	IFRD1	NCOR1	CDW52	SLC35E2	GSN	SP2	20D7-FC4	POLR2C	FLOT1	STC2	KIAA0141	G10	CDK11	WRB	SLC7A5	GSTZ1	IL4R	WARS	CHRNA5	CAMK1	CDKN1B	MAP4K2	WIRE	PXR1	ALDH6A1	CAP350	CDKN1C	KIFAP3	KIAA0342	hnRNPA3	P29	C20orf18	PYCR1	ZNF36	NFIX	ASNS	IGSF4	BMP7	SAS	DRAP1	DDX46	DECR1	KIAA0652	ASS	KIAA1025	BTG2	YF13H12	MGC2650	PPP1R15A	PEX11B	DKFZP586P0123	UQCR	MAPK13	PPP2R5C	RASGRP3	CREG	SPON1	SLIT1	FLJ13052	BCKDHA	LAP1B	C14orf11	XPC	DKFZP434J154	TCF12	SPINT2	GGT1	VEGF	EPS15	MMP15	KIAA0339	PIPPIN	BAI2	RTP801	CLN3	SLC3A2	PEX10	ARRB2	EIF3S1	CABIN1	TRRAP	KIAA0355	KATNB1	CDC25C	IGHM	GOLGIN-67	AKR7A2	LY86	ACADVL	IGBP1	BIRC5	DRIL1	TM9SF1	FOXO1A	FUCA1	CEBPB	PHF2	RASA1	FCGRT	MAP2K3	KIAA1037	RASGRP2	RAB6IP1	CSNK1G2	ASXL1	BARD1	CBFA2T3	NANS	LKAP	ABCB9	LAPTM5	PNOC	ITPR3	DDB2
GLUT_DOWN	Peng_at_al_2002	UMPK	IFI30	RPS26	UBE2G2	SYNGR2	RNU3IP2	ILF2	PSMD11	HSPA5	COG2	FKBP2	ADRM1	CAD	TRIP13	KARS	FUS	KHSRP	M11S1	DKFZP564F0522	GOLGA1	PSMD3	MLP	DDX18	ACAT2	LMNB1	PSMD12	TOP1	ERF	BMS1L	FARSL	PTPN6	PPP1R10	SLC19A1	SRPK1	TRA1	VDAC1	ARS2	EIF5	EMP3	SFRS1	GCSH	C7orf14	RABGGTB	CCND1	ICSBP1	ZAP	MYD88	FKBP4	ABCF1	AHSA1	CTSC	HSPE1	INHBC	TCP1	XPO1	PRPS1	FASN	HRMT1L2	SRRM1	EIF4G1	FNBP3	ADCY3	HNRPL	SFRS2	SF1	FLJ12443	MLF2	DDX21	LIMK2	XBP1	ME2	TNRC11	PPIF	SFPQ	SLC5A6	MGC2749	PRODH	CHD4	SLC29A1	NOL5A	PSMD8	CELSR2	BYSL	PABPN1	MRPL12	COPS3	METTL1	MGC5508	MAP3K11	P5	KIAA0179	SSBP1	HSPC111	KPNB2	C16orf34	BOP1	DNAJA1	PDCD4	CYCS	HSGP25L2G	KIAA0116	SMARCC1	PTDSS1	CGI-48	SNRPA1	DNAJB1	TGFB1	ALG3	SRM	PIK3R2	SURF5	HSPA8	PGAM1	HSA9761	ALDOA	GJB1	RBBP6	CLIC1	SACS	TUBB5	DDX19	TDG	CTPS	NDUFS6	CSE1L	MYST1	SNRPB2	RPP20	RNASEH1	EWSR1	CCT2	PRPF4	TXNIP	ARHG	BCAP31	RANGAP1	XRCC5	PPP2R2A	EBNA1BP2	BTK	PAICS	RPLP2	PPIB	ALG8	IDH1	AF1Q	DOK4	SF3B4	EIF2B4	C11orf9	RRP4	NME1	DPH2L2	C8FW	AMD1	HS6ST1	PHB	PSMB3	SNRP70	PRDX1	IMPDH1	PSMA6	PA2G4	EIF2B5	MAZ	EIF1A	DLEU1	RBP1L1	PFKP	NUDC	HRAS	LAMB3	OGFR	PRKCBP1	UNRIP	FLJ11126	ATP5G3	NOLC1	EEF1E1	HNRPAB	ZNF207	PIK3R3	NUP98	ADAM19	FLJ12671	RAB9P40	FDFT1	RUVBL2	SQLE	PSG7	HBD	MPHOSPH10	SLC4A7	G3BP	HSPCA	PSMB6	PTMS	GCDH	POLR2C	NMP200	IDH3A	MORF4L2	TUBA1	MTHFD1	GSPT1	ATP1B3	PWP2H	C1QBP	NOL1	UBE2M	RQCD1	MEP50	SSB	IFRD2	MRPL3	ARMET	ATR	STAT1	SLC29A2	ATP2A2	SEC61B	DYRK1A	PCBP1	TAP1	CCNB1	PSMD1	AK2	ODC1	GMPS	ERH	IDI1	ZMPSTE24	VCP	TIMM17A	SNRPF	HNRPA2B1	PSMF1	CCT6A	FBL	NP	DHCR7	C2F	TMP21	CCT5	TUBG1	C10orf7	SCD	UBE2N	DHX9	MRPL28	TOMM40	L3MBTL	PFN1	HSPCB	LDHA	PRDX4	DKC1	HPRT1	RRS1	RBM14	CDC25A	GRIN2A	MRPS12	BZW1	SYNCRIP	PSG11	YIF1	CYC1	RNF126	HSPA4	BAZ1A	CBF2	TFRC	KPNA2	MMP15	EIF4G2	CALR	TBL3	VARS2	DHCR24	SARA1	UMPS	KIAA0117	SGTA	LOC84549	SC4MOL	LDHB	NICE-4	MRPL23	YPEL1	GARP	PRKCABP	CDC20	PSME4	EBP	EIF5A	DDX1	NUP160	PES1	MAPRE2	NCL	CTAG1	DNAJB6	ACLY	TCEB1	MGC5178	IF2	DDX48	HSU15552	NMT1	DHX15	TARDBP	D10S170
LEU_UP	Peng_at_al_2002	ATF4	MTHFD2	CLCN6	ATF5	ISG20	APS	SSR2	DAAM1	PCK2	GCHFR	CIRBP	MARS	MEF2B	TNNT1	MAP1LC3B	CUTL1	TFF3	KHSRP	XPOT	ALDH2	AIM1	PRKCBP1	MGEA6	MIDORI	HDAC5	C22orf1	CARS	BMP1	LOC51035	C6orf80	PLXNB2	APOBEC3G	ERCC2	APBB3	GBF1	NCOR1	UNC119	ITGB3BP	BCL7A	SUI1	INS	GCDH	SIAT1	NFE2L1	101F6	KIAA0889	G10	RAB3GAP	WARS	CAMK1	HIST1H2BE	PHGDH	hnRNPA3	A2LP	FCER2	IGHG3	ANKRD15	PYCR1	MT2A	LRMP	ASNS	BNIP3L	CKB	BMP7	MUC3A	POU2F3	RW1	HMGA1	KIAA0922	DDX46	DECR1	AARS	LCK	IDH2	BTG2	RERE	ASS	CLIC4	S100A11	PSPH	HAX1	MGC2650	UBE2N	CD6	PPP2R5C	RASGRP3	SPAG9	PDCD4	SHOC2	IRF2	MTX1	PSAP	BACH1	SLC43A1	SWAP70	PCBP3	SARS	SLC3A2	TNFRSF7	SIAT4C	MAG	VPS39	MGST2	IGHM	PRELP	SLC1A5	PSCD1	SLC1A4	KIF2C	DRIL1	PRKCABP	CEBPB	PDE6D	TXNIP	SURF1	BMI1	YARS	SLC6A11	CSNK1G2	CPNE5	CD22	GPLD1	LAPTM5	CDKN1A	PNOC
LEU_DOWN	Peng_at_al_2002	SF3B4	DHRS1	PM5	PSMD14	GLO1	EIF2B4	C11orf9	HUMGT198A	AMD1	DOC-1R	ETF1	PSMD11	HSPA5	FKBP2	ADRM1	CAD	RBP1L1	TRIP13	UNG	DKFZP564F0522	KIAA0601	KIAA0150	PSMD3	ACAT2	OGFR	MCM4	FDPS	TOP1	EMD	FARSL	PTPN6	NUP98	ILF3	PIK3R3	TRA1	POLG	SQLE	VDAC1	HBD	EIF5	EMP3	NXF1	TNFRSF1A	HSPCA	PAPOLA	WDR1	PTMS	NME2	PSMD2	GCDH	DNCL1	KIAA0152	KIAA0290	FKBP4	TUBA1	MTHFD1	AHSA1	GSPT1	CTSC	HSPE1	TCP1	NOL1	UBC	COPB2	VRK1	BST2	SSB	FASN	CCNA2	MRPL3	PSMB7	HRMT1L2	ARMET	EIF4G1	FNBP3	PTBP1	FLJ10737	SFRS2	SEC61B	DYRK1A	FLJ12443	CCNB1	TK1	MLF2	NUTF2	DDX21	PSMD1	LIMK2	NBL1	ME2	PFKM	ERH	IDI1	PGK1	TIMM17A	SLC29A1	GGA2	NOL5A	PSMF1	BYSL	CCT6A	NP	MRPL12	ERP70	BACH	MGC5508	CCT5	DHX9	UBE2N	SCD	KIAA0179	MRPL28	P5	TOMM40	HSPCB	HSPC111	LDHA	DKFZp434K1815	DNAJA1	HPRT1	PDCD4	RBM14	MRPS12	CYC1	SPINT2	CYCS	E2-EPF	HSPA4	RNF126	EI24	CBF2	TFRC	KPNA2	MMP15	SNRPA1	TCFL4	RASSF2	TGFB1	SRM	EIF4G2	TEBP	CHC1	CALR	HSPA8	DHCR24	PGAM1	UMPS	KIAA0117	ALDOA	CCT4	TUBB5	XPO6	LDHB	NICE-4	TDG	CSE1L	GARP	TRIP15	CDC20	PSME4	CCT2	EBP	DDX1	KIAA0007	XRCC5	MAP2K3	NCL	PSMA5	DNAJB6	POLRMT	PPIB	ALG8	TCEB1	KIAA1055	NMT1	AF1Q	PSMA7	GART	BRD2	STK6
GLUCOSE_UP	Peng_at_al_2002	POU2F2	DRAP1	UNC119	MS4A1	CORO1A	AARS	IDH2	GM2A	CLCN6	ATF5	ADA	MGST2	TCF20	24432	IGHM	CROC4	SC4MOL	PRB4	FLJ22531	FKBP2	PCK2	TOMM40	WARS	OCLN	URKL1	CEBPB	MS4A2	GPX6	EMS1	MYB	AF038169	MAP2K3	ACTA1	KIAA0685	CARS	BCAT2	PYCR1	PLOD	ASNS	MFNG	GART	LTBR	HNRPDL
GLUCOSE_DOWN	Peng_at_al_2002	DKK4	HEAB	FZR1	EIF2B4	ELMO1	ATP5J	PHB	ILK	SLA	CALM1	SSTR5	PDAP2	NMU	UCHL1	DAPK2	KIAA1041	AGL	RAP1A	TNNT1	FUS	SF3A3	HLF	ARPC5	KIAA0150	PRKCBP1	ADCYAP1	TERF2	BMP1	TEGT	MSH2	SCN4A	NUP98	ID2	POLG	ITGB7	NAP1L1	MYCN	CCNG1	CAPZA1	G3BP	KIAA0284	SFRS1	MRPS18B	ELL	RAB1A	EIF3S3	GC20	PPP2R5A	PTGER3	GCDH	MAP4	DPYSL2	SMC4L1	WBSCR1	ARTN	RAB2	HIP1R	CD47	ASF1A	TRAF5	DVL3	ADNP	RAB9A	ZFY	CDC2	AAMP	SFRS2	ATP2A2	ARF4	DYRK1A	ERAL1	GTF2A2	VNN2	RB1	RRBP1	NFYB	H2AV	DKFZp434I1916	POGZ	IFI16	DKFZP547E1010	USP33	FUBP1	EHD1	HSRNAFEV	MAD2L1	ESPL1	GABARAP	TIMM17A	SH2B	GJB5	MGC8721	ABO	ECE2	UBE2N	SSBP1	FOLR1	DNAJA1	BCL2	PDCD4	BFSP2	RNF6	PURB	PAPSS1	BAZ1A	MKI67	C1orf8	ACK1	MICB	CREM	COMT	SIAT4C	DEK	USP12	SLC25A5	KIAA1093	MTVR1	HTR1B	EDG4	ATP6V0B	CCT4	CD86	RAB31	E2F4	TUBB5	WEE1	MAGED1	RANBP2	ARHGEF6	BPAG1	PICALM	PRKCABP	GORASP2	RBBP4	SMC5L1	TXNIP	E2F1	KIF11	XRCC5	HNRPR	PSMA5	SEC24C	DNAJB6	RPA3	CDC7	GPR3	RPLP2	RAB5A	MYEF2	SFN	ZFR	SLC12A4	AF1Q	GMPR	FOSL2	OIP5	STK6
BRCA_UP	Welcsh_et_al_2002	RDX	VAMP3	TITF1	ID4	STC1	IL16	CITED2	CLTB	SERPINB1	COP9	SEC23A	PPP1R1A	WRB	MAP2K1	FSTL1	TSNAX	NFYC	ZNF138	KIF2	PBP	ENPP2	KCNK1	H1F0	ZNF148	CALD1	P2RX1	GALNT3	HTATIP	APP	JAK1	STAT1	LAMA3	CCNG2	MGAT2	IDH1	RRM2	ADD1	LIMS1	LIPA	SEPP1	EXTL2	TFPI2
BRCA_DOWN	Welcsh_et_al_2002	RXRA	NDRG1	BOP1	GCN5L2	NUP214	CHD4	SKIV2L	EIF4G1	HSF1	CCND1	SLC19A1	C11orf13	MYC
FRASOR_ER_UP	Frasor_et_al_2004	GREB1	EGR3	EPB41L3	AP1G1	IGFBP4	RAB31	SLC22A5	ADCY9	AREG	TOP2A	MYBL1	PEG10	CXCL12	CDC6	CA12	GLRB	PDZK1	SLC39A6	SPUVE	CALCR	PTGES	RASGRP1	SDC2	MAPT	C11orf8	TFF1	SIAH2	WISP2	RET	FOS	NRIP1	RFC4
FRASOR_ER_DOWN	Frasor_et_al_2004	BIK	STC1	KIAA0922	TGFB2	L1CAM	IFI30	INHBB	ARNT2	LAMB1	KRTHB1	ASB9	CD24	STXBP1	BLNK	EFNA1	MYO1B	CLU	HIST2H2AA	COPEB	MB	KYNU	TM4SF1	APM2	GNE	SELENBP1	TGFB3	HIST2H2BE	BCAS1	ABCC5	NELL2	CBX6	GNS	BMP4	RTP801	ENC1	D2S448	RAP1GA1	MXD4	ANXA3	EPOR	PVALB	DBN1	PIB5PA	LHFPL2	ECH1	MADH3	RAI3	IER3	IRF6	ERBB2	FMO5	SNK	ARHE	CTSL	TRG@	SLIT2	FOLH1	DUSP1	KRT7	NDRG1	ALDH4A1	DUSP4	MMD	PPP1R3C	PRPS1	LAMB2	ASPH	NFRKB	MATN2	LITAF	CTSH	IL1R1	ABCG1	LOC92912
ANDROGEN_UP_GENES	na	UAP1	IDI1	KRT19	CPD	SNAP25	PHYH	SORD	SCD	ADRM1	ELL2	INPP4B	SAT	UGDH	MERTK	TMPRSS2	KLK3	AKAP12	SMS	B4GALT1	ID2	ITGAV	AZGP1	B2M	RBM10	DHCR24	MAF	LIM	ORM2	ACTN1	APPBP2	DCTN3	SRP19	IQGAP2	HMGCS1	ABCC4	HPGD	ALDH1A3	HERC3	SEC24D	FKBP5	SGK	GUCY1A3	NDRG1	LMAN1	H1F0	KLK2	CAMKK2	GSR	KLF4	PPAP2A	ANKH	TMEPAI	TPD52	VAPA	DNAJB9	SEPP1	LIFR	DBI	PTPN21	SLC26A2
ANDROGEN_GENES_FROM_NETAFFX	na	RODH	LCN7	RWDD1	ARSD	CYP19A1	CRISP1	GPX5	AKR1B10	NR1I3	TGFB1I1	C6orf105	HSD11B2	STS	HSD3B1	RODH-4	NCOA4	FLJ21934	RDH11	SCGB2A1	APRIN	UGT2B15	AKR1D1	TMPRSS2	RNF14	SHBG	UGT2B4	HSD11B1	NR3C2	ABHD2	CRSP2	CYP11B2	SULT2A1	NR3C1	KIAA1093	HSD3B2	SRD5A1	SULT2B1	HSD17B8	RDH5	PPARBP	VDRIP	HSD17B3	C20orf14	FXR2	FGF8	PART1	FKBP5	RAN	ARSE	AKR1C4	PPAP2A	AR	C18orf1	NSD1	CYP11B1	TMEPAI	HSD17B2	UGT2B17	SRD5A2	UGT2B28	CRSP6	TNRC11
AR_ORTHOS_MAPPED_TO_U133_VIA_NETAFFX	na	MAN1A1	GJB3	ADRA2C	ALPL	ADAM7	PTPRO	ISG20	GSTM1	MYOM2	ISYNA1	FKBP11	MTND5	BTG3	TPMT	GPX5	SC4MOL	ERP70	GPC1	GLUL	CYB561	PEMT	ARAF1	NUCB2	FKBP5	EBP	CA4	KCNK1	KIAA0251	RAMP3	RRM1	KCNK7	FDPS	GLDC	ACE	STMN1	AGPAT3	CA2	AGR2	FDFT1	GFRA1	NCF2	INDO	KLRB1	ENPP1	TCF7	ADCY8
AR_MOUSE	na	MAN1A1	GJB3	ADRA2C	ALPL	ADAM7	PTPRO	ISG20	GSTM1	MYOM2	ISYNA1	FKBP11	MTND5	BTG3	TPMT	GPX5	SC4MOL	ERP70	GPC1	GLUL	CYB561	PEMT	ARAF1	NUCB2	FKBP5	EBP	CA4	KCNK1	KIAA0251	RAMP3	RRM1	KCNK7	FDPS	GLDC	ACE	STMN1	AGPAT3	CA2	AGR2	FDFT1	GFRA1	NCF2	INDO	KLRB1	ENPP1	TCF7	ADCY8
AR_MOUSE_PLUS_TESTO_FROM_NETAFFX	na	MAN1A1	GJB3	ADRA2C	CYP2B6	PTPRO	ISG20	ISYNA1	BTG3	GPX5	TPMT	ERP70	GPC1	CLU	CYP2A13	CYB561	ARAF1	FLJ21934	RAMP3	RRM1	UGT2B15	FDPS	CYP3A5	GLDC	ACE	AGPAT3	AGR2	UGT2B4	EAF2	FDFT1	GFRA1	INDO	KLRB1	ENPP1	TCF7	ALPL	ADAM7	GSTM1	MYOM2	CYP3A4	FKBP11	MTND5	SC4MOL	GLUL	PEMT	FKBP5	NUCB2	EBP	CA4	KCNK1	KIAA0251	AR	KCNK7	CYP3A43	STMN1	UGT2B17	CA2	CYP2A6	UGT2B28	NCF2	CYP2C9	CYP3A7	ADCY8
XINACT_MERGED	na	ARSD	ATP6AP2	CA5B	DDX3X	EIF1AX	EIF2S3	GRPR	INE1	OFD1	PCTK1	PIR	PRKX	RPS4X	SMCX	STS	TBL1X	TMSB4X	UBE1	USP9X	UTX	ZFX
TESTIS_GENES_FROM_XHX_AND_NETAFFX	na	MCSP	TSGA10	SCML1	WDR10	SLC6A8	HLC-8	ADAM29	WT1	DNALI1	FAM12B	TCTE1L	DNAJC4	BRDT	GRB14	ISYNA1	CRISP1	PRM2	CYLC2	CHODL	RNASE1	ADAM2	PTGDS	MAP7	USP2	PSORS1C1	TCTEL1	DDX3Y	DDX4	TFDP2	TEX13A	TSKS	CXADR	DDX3X	CLGN	AMH	NUP98	SOX30	TEX14	TCP11	PPP2R1B	DKFZP434P211	DKFZp434H2215	TF	BAT2	BGR	DMRT1	HSD17B3	STK22B	SPACA1	TTTY2	SOX5	GAPDS	GPR135	SPINLW1	EIF1AY	FLJ36166	MNS1	TSC	SSX2IP	COIL	TEX15	TTTY15	NR0B1	TUBA4	ALG8	POMZP3	DDX43	CTAG2	HSPA1L	CRAT	KCTD13	ACE2	TZFP
GNF_FEMALE_GENES	na	HRB2	WSB1	RPS27A	RPS3	PTGIS	RPL36AL	EFEMP1	CLIC4	TMOD1	RPS24	TCTE1L	TGFBR3	SRY	EIF3S6	RPL21	HTR2B	NNMT	IGFBP1	SFRP4	NS3TP2	FTL	RPL9	RPL35A	RPL15	RPS4X	GYPC	RPS6	CREB3L2	CLECSF2	IGFBP5	MITF	PRG1	LRP1	RPL7	SLC24A3	CCL21	NAP1L1	HNRPDL	DHRS8	CYR61	RPL5	RPL39	HNRPA1	MFGE8	AEBP1	TPM4	IGFBP4	RPL6	CDH11	RBMS1	IGFBP3	SH3BP5	IFITM2	RPL34	SERPING1	RPS3A	RPL26	TGM2	ISLR	GAS1	RPL17	ITPR1	CEBPB	OGT	RPS17	TXNIP	COL6A3	STOM	GBP2	RPL36A	GAB2	GATA6	RPL31	THBS1	ADAMTS1	PROS1	RPL10	CACNG2	XIST	EEF1B2	LAPTM5	ADAM22	COL6A1	RPL24	IFI16
GATA1_WEISS	Weiss_et_al_2003	HBZ	MAFG	TFR2	KLF1	GYPA	HMBS	NFE2	ANK1	MAFK	HEBP1	FTL	HBA2	SERPINI1	MAFF	EPB49	MAFB	HEBP2	TFRC	BACH1	SLC12A5	UROS	GSTT2	HBB	PPOX
HEMO_TF_LIST_JP	Manually Curated	E2F2	KLF1	LHX2	PAX6	FLI1	HHEX	MEIS1	WT1	HLX1	FOXD3	NFYA	NOTCH1	PBX1	MLL	HOXC6	MAFB	KLF3	EGR1	GFI1	HOXA5	ZNFN1A1	NFIB	MYC	ETS1	EP300	TCF3	MYB	HOXD13	NFIC	PAX8	MAFK	GBX2	HIF1A	ELF1	EPAS1	TAL1	NF1	GATA1	KLF13	HMGB3	SPI1	TFAP4	BMP4	HOXB3	CREBBP	POU1F1	GATA3	STAT5A	NFE2	IRF1	GATA2	RUNX1	ETV6	JUN	DLX4	LMO2	PRRX1	HOXA10	TFAP2A	SP3	CEBPA	ETS2	NFKB2	STAT3	ETV4	ZNF42	CEBPB	SRF	E2F1	EED	BMI1	HOXB8	USF2	PHC1	HOXA7	MEFV	HOXD3	STAT1	HOXA9	NFKB1	NFIX	PAX5	POU2F1	CEBPE	HOXB6	XBP1
HOX_LIST_JP	Manually Curated	HOXC8	HOXA6	SCML1	CBX8	LHX2	HOXD10	HHEX	HOXB5	MEIS1	HLX1	HOXD11	PBX1	HOXB13	HOXA5	SCML2	HOXD9	EZH1	HOXA2	HOXC11	HOXD13	SCMH1	YY1	GBX2	HOXA4	PHC2	HOXC10	HOXA11	HOXC13	HOXA1	HOXD1	CBX4	HOXD12	HOXB3	HOXA3	EZH2	DLX4	PRRX1	RNF110	HOXA10	HOXB2	HOXD4	RING1	HOOK1	HOXB7	HOXC4	JJAZ1	EED	BMI1	HOXA7	PHC1	HOXD3	HOXB1	ASXL1	HOXB9	HOXA9	HOXB6
HUMAN_CD34_ENRICHED_TF_JP	Manually Curated	BTEB1	ZNF184	NT5C	TANK	ATF3	RUNX2	PC4	GTF2H1	ATF2	NFYA	ILF2	TFCP2	E2F3	BAZ2B	GTL3	NHLH1	SHOX2	FHL5	MTERF	JUND	PITX2	ZFP161	ZNF278	ZNF9	ZNF187	GTF2H3	GATA1	SPI1	ILF3	CNOT8	ATBF1	ZNF268	SNAI1	PAXIP1L	CEBPG	ZNF482	GTF2H2	ETS2	SRF	BAZ2A	TCF2	RRN3	TCEAL1	ZNF324	TCF4	GTF3A	SP4	SKP1A	DATF1	NFKBIB	TCF21	ZNF205	MYB	NFIC	TTF1	STAT5B	STAT6	ZFD25	ZNF76	HIF1A	BACH1	MITF	FOXF2	CIZ1	TFAP4	MGC11349	C21orf96	TCF7	ZNF505	POU2F2	DEK	TCEA2	NFKBIA	TFDP1	CNOT4	ZNF281	ZNF282	CHFR	CNOT2	ZNF146	STAT3	RING1	FOXF1	HEY1	TCFL1	HSF2	BMI1	TRIM10	GTF2F1	CTCF	ZNF212	NFKB1	TCEA1	CNOT3	POU2F1	ZFP95	ELK1	RNF3	ZNF174	ATF4	ZNF165	RELA	ATF5	ZNF177	ZNF200	BLZF1	MAZ	ZNF167	UBTF	ZNF22	MYC	ELF3	MEF2B	ZNF232	NAB2	ID3	POU5F1	PHF1	ZNF262	GTF3C4	ID1	MHC2TA	DR1	BTF3	MEF2A	NCOR2	FOXG1B	NCOR1	MAFG	ID4	JUNB	NONO	FOXJ1	MTF1	VENTX2	HIVEP1	ZNF175	PBX2	ZNF228	CNOT7	FOXD1	CITED1	MKRN1	MAFF	GTF2I	STAT1	GTF2A2	NFIX	FOXE3	NFYB	POU6F1	ELF4	FOXM1	ZNF35	MYBL2	TFE3	MYBL1	LZTFL1	HSF2BP	SREBF1	CHUK	SPIB	ZNF16	SND1	TCF12	RNF6	TCF7L2	FOXC1	RNF25	RNF5	ZNF294	RELB	ZNF14	BAZ1B	TFAM	CIR	CGRRF1	RUNX3	FLJ12985	CITED2	RUNX1	E2F5	JUN	THRA	MAF	E2F4	ISGF3G	RNF13	IKBKB	ATF6	ZNF42	RNF7	FOXO1A	CEBPB	TLE2	PBX3	E2F1	MEF2C	NHLH2	TCEB1	REST	SKI
PROLIF_GENES	Manually Curated	IL9	TCF8	CTNNBIP1	SSR1	TSHR	REGL	CD5	SSTR5	CDK9	GPC4	CDK5RAP3	BUB3	CTF1	EML4	TBC1D8	CDC27	EGR4	CAPNS1	CLK4	SYK	CYR61	MXD4	CTBP2	OSMR	TXN	CHRM5	EMP3	USP8	CXCL10	EDG5	ADRA1A	BTG1	RPS27	ELN	SIPA1	LDOC1	IL7	EMP1	PRKR	MET	FRK	ELF5	TOB1	PTCH	FSCN1	NPDC1	TGFB1I1	ENPEP	MS4A2	BOP1	HELLS	WIT-1	PRKCA	TGFB3	ARHGEF1	DNAJA2	IGF1	KRT16	NF1	CDC14A	SNF1LK	DDX11	TGFB1	IL2	NDN	ANP32B	LRPAP1	CUL5	TNFRSF8	TPX2	FGF2	RBBP6	TNFRSF5	CSE1L	CUL3	KIF2C	PRKRA	PRL	PRKRIR	FGG	GFER	RBBP4	GPNMB	FES	AKR1C3	SFN	SON	CDKN1A	PCAF	CDC2L5	DLEC1	IL13	FANCL	MKRN2	TP53I11	CCL23	C22orf18	CD33	NME1	ICOSL	HDGF	CAPN1	PRDX1	PA2G4	RBM9	MST1R	CDC16	MYC	ERBB4	MAS1	IL1B	BTC	LGI1	TIEG	EDNRA	IL6R	ANP32C	IL8RB	VIPR1	ERBB2	OSM	WARS	IL12RB1	CDKN1C	MCTS1	APEG1	CDK5R1	CDK10	SLC29A2	IL11	TNFSF5	GCG	MATK	DLG3	MDK	IGF1R	SAS	TCFL5	FGF18	QSCN6	IL4	EMP2	EREG	BTG3	EDN1	SIL	C10orf7	CLK1	IL2RA	CDKN3	BIN1	ETS1	MXI1	DKC1	REG1B	SND1	IFNB1	NR6A1	IGFBP6	EPS15	VHL	ANP32E	CDKN2A	CSRP2	CGRRF1	POU1F1	PPBP	SSTR3	RUNX3	LIF	FABP6	IL15	CUL4A	PDGFA	CUL2	LMO1	COL4A3	CD86	NPY	TNFSF9	BHLHB3	CXCL1	TM4SF9	FGF8	TNFSF7	CDKN2C	IL15RA	MAPRE2	CDK5RAP1	VEGFC	CDC7	GAS6	CBFA2T3	SESN1	IRS2	TSPAN-1	DCTN2	FGF6	CSF1R	C6orf108	8D6A	TAF1	FGF7	CHEK1	FGB	CSF3	MNT	CRIP1	FLT3LG	EGF	CDK2	ADRA1B	RPS4X	PDAP1	ERF	TACSTD2	EVI5	CHRM4	TNFRSF11A	SSTR4	CTBP1	INSL4	IL2RG	HGS	CDKN2D	ARTN	ADRA1D	SKB1	SIPA1L1	KHDRBS1	IL12RB2	BST2	IL8	GLP2R	PTN	TGFA	TIEG2	PPM1D	SPOCK	TGFB2	FIGF	S100A11	BAP1	PYY	RBBP7	IRF2	ANP32A	TGFBR2	PRTN3	MDM2	EPS8	MKI67	TNFSF12	EGFR	FGFR1OP	FGF3	MAGOH	IGFBP4	IL1A	PAWR	FTH1	TOB2	CSF1	SCGF	TTK	SERPINF1	PRG4	PCNA	KLF4	IL3	TNFRSF9	ING1	PGF	CDK4	MDM4	KNSL7	THPO	NCK2	FLT3	IGF2	FGA	RARRES3	IGFBP7	CXCL5	TIMP1	DUSP22	CD81	IL5RA	MT3	NAB2	NUDC	FGF5	APRIN	VIP	TNFSF4	HDGFRP3	LAMA1	COL18A1	ADAMTS8	LRP1	CD160	IL10	NAP1L1	BCL6	FZD3	GRPR	GAB1	TM4SF4	NME2	ZFP36L2	RFP	FLT1	AREG	PMP22	GSPT1	RAF1	CDKN1B	MAP1A	MAD	NOL1	IL5	IFRD2	S100A6	TNFRSF17	GNRH1	APPL	PTK2B	DHPS	ADRA2A	PTHLH	CD28	DTR	PRDM4	CD3E	VEGFB	PDGFRA	1-Dec	BTG2	PSPH	GML	FABP7	TPD52L2	NDP	SSTR2	IL12B	KITLG	BCL2	TM4SF8	CUL1	GRN	CDC25B	HOXC10	IFITM1	UMOD	VEGF	CMKOR1	MLLT7	BAI1	TAL1	AIF1	RARRES1	MTCP1	FABP3	EVI2A	JAG2	CDKN2B	LAMP3	HTR1A	S100B	FGF9	TNFSF8	CHRNA10	MAPRE1	LY86	MIA	SKP2	PDGFB	CD164	UBE2V2	SHC1	GAS1	MPL	CIAO1	INSIG1	PLG	DRIM	SIRPB2	DAB2	TSPAN-2	PRDX2	IL18	E4F1	ADAMTS1	PTEN
DOWNREG_BY_HOXA9	Manually Curated	IGF2	CD36	WSB1	JUNB	KRT18	GATA2	SFRS11	MAN2A2	SERPINB9	SBNO1	CDC37	JUN	TPR	SDCBP	RBBP6	SDC4	ARNTL	DSIPI	MYC	FCGRT	GLRX	SRP72	LYN	DCT	HBE1	BMI1	CLCN7	VHL	OSBPL8	FXR1	CISH	DNCLI2
UPREG_BY_HOXA9	Manually Curated	ACHYL1	ADD3	ALDH1A1	ARHGAP11A	ARL3	ARPC5	CALB1	CDK7	CTH	CUGBP1	DHX8	ETS2	GNG10	GTPBP1	HMGN2	HNRPU	INPPL1	MAFG	MAN2A2	MYB	NLK	OSBPL9	PCMT1	PHOX2A	PKNOX1	RAB31	RAP1B	RNF103	RPL27A	SFRS11	ST13	TDE2	VIM	YES1	PIM1
KRAS_TOP100_CONTROL	Cordero_et_al_2005	TNFRSF10D	FOSL1	H3F3B	LBR	INHBB	FLJ20241	PARD6B	BENE	LRP8	BYSL	TPSD1	CRISP1	WNT2	CXCL5	HMGA2	GPD1	PPP1R3A	CHIT1	PTMA	MRPS12	RNF6	RRM2	ETV5	UTY	DKK1	TCFL4	SPRED2	FLJ20130	POLR3K	ATP6V1B2	CXorf1	EIF5	TLOC1	EPHB3	IGF2AS	MGC4606	H2AFY	ARL7	SEMA6B	SSX2	CTSL	CEACAM6	SSRP1	CALU	PHLDA1	UPP1	BEX1	PDZK2	PDE4C	SKB1	DUSP4	KRAS2	RAB40C	EPB42	HAT	EBNA1BP2	ENTPD6	APP	TEP1	PARD6A	SLC9A3R2	ALDH3A1	IRS2	RGS2	ODC1	F2RL1
KRAS_TOP100_KNOCKDOWN	Cordero_et_al_2005	ADCY7	TGFB2	TIMP3	MUC3B	C8orf4	ACVR1B	SOX4	EVL	SPARC	DICER1	ULK1	MAP3K8	GPR56	TUFT1	CCL2	COL4A2	IGFBP7	HGD	MYL9	CGI-116	SERPINE1	C1S	MGEA5	EPHB2	INPP4B	HSPB1	GABARAPL1	CALD1	DKFZp434P162	WASPIP	TGFBI	DKK3	DFNA5	TNS	NALP1	CMKOR1	BMP1	SERPINE2	HSPG2	WISP2	TAGLN	ADAM19	TPM1	MSC	ITGAV	LAMP2	ST5	COL1A1	SNAI1	PLEKHC1	CHST3	CLDN4	DNAJB2	BHLHB2	JUNB	PDXK	ATP2B4	JUN	IGFBP3	COL7A1	SLC22A5	P4HA2	GLIPR1	COL5A1	SGK	COL4A1	RSU1	NPTX1	ECE1	PGLS	CDH4	JAK1	KIAA0992	TMEPAI	GADD45B	FLRT2	MATN2	SLC16A4	LBH	NCK2	IGSF4	NCF2	ARK5	SPOCK
RAR_UP	Manually Curated	MXD4	SIAT4C	ANXA6	CASP1	DGAT1	DCN	SNX10	NR2F1	NET1	GSTA4	DHRS3	OGN	CTSB	SLC12A2	ABCA1	SSR1	LBP	MSLN	HS3ST1	CP	CASP3	RNASE1	COL4A5	AGT	ENPP2	MARCKS	C3	IVD	VEGFC	RB1	HSD11B1	FDFT1	NRIP1	DIO2	LAMP2
ADULT_LIVER_vs_FETAL_LIVER_GNF2	Manually Curated	RODH	CYP4A11	ASL	ABCC3	IGFALS	HLA-DQB1	C6orf108	CYP2B6	CYP2E1	UPB1	C8G	APCS	RARRES2	SIGIRR	NRTN	WARP	GPD1	CD81	PTGDS	DKFZP586B1621	RODH-4	NNMT	ACY1	APOC4	IFITM1	IGF1	PKLR	SLC25A10	SLC22A1	G1P2	C1R	HAMP	PCK1	HSD11B1	GPR30	DCPS	AZGP1	ABHD2	CES2	COMT	CLPP	DKFZp451J0118	HPD	CES1	NDUFA7	RAB26	SHMT2	CYP27A1	STAP2	ITIH4	CD151	FLJ13798	CD14	NKG7	GSTM1	ENDOG	SLC27A5	HGFAC	PPP1R1A	SDS	CYP1A2	HLA-DQA1	GSTZ1	MYH7B	KIAA1847	GSTM2	FLJ10847	LGALS1	MGC10334	ECHS1	DEXI	AQP9	CYP2C8	ADH1C	CYP2A6	UQCRC1	MUCDHL	CYP2C9	IGLC2	TXNRD2
FETAL_LIVER_HS_ENRICHED_TF_JP	Manually Curated	HKR3	EGR3	RBX1	ZNF238	NCOA3	HHEX	MLL	ILF2	EGR1	NMI	SMARCD1	TFE3	IFI35	GFI1	UBTF	ETS1	DBP	MYC	HLF	HP1-BP74	SPIB	SMC1L1	HMGB1	PHC2	RNF14	ELF1	SPOP	ETV5	SOX13	MEF2A	SPI1	PHTF1	BAZ1B	H2AFY2	SIRT2	STAT5A	ID4	GTF2IRD1	HIST1H4A	MYST3	GATA2	TCERG1	FOSB	RUNX1	TGIF	ELK3	HMGN2	ZNF282	BRD4	PROX1	EVI1	HDAC1	PMF1	ELK4	NR2C2	DSIPI	RNF4	MED6	RNF7	RFXANK	FOXO1A	SRF	NRF1	SOX15	MEF2C	H2AFZ	TCFL1	ZFP64	SP100	MDFI	HTATIP	DNMT3B	NSD1	HCNGP	DNMT3A	DDIT3	NFKB1	PQBP1	FOS	ZNF435	NR1H3
CBF_LEUKEMIA_DOWNING_AML	Manually Curated	MN1	BAALC	MAN1A1	ADCY7	PGDS	NCALD	CACNA2D2	PTGER2	TPK1	ABR	SPARC	TRIO	ROBO1	PURA	ISG20	DUSP2	CYLN2	WFDC1	RCBTB1	RASA4	TRH	IL5RA	PIK4CA	TRIM8	EGLN1	CBFB	WASPIP	SYNGR1	MKNK2	MHC2TA	HIF1A	CAV1	CLECSF5	ADARB1	DUSP6	CBFA2T1	CRIP2	DHRS8	C11orf21	BLVRA	CDW52	JUNB	HLA-DPA1	HLA-DPB1	GALNT14	ITGB4	CD58	ATP2B4	NARFL	HOMER2	TBXA2R	PRAME	POU4F1	OGG1	EGFL7	DISC1	SIPA1L1	MGC3222	PMAIP1	PTGIR	HYAL2	IL15RA	MYH11	DEXI	DNMT3B	SLC25A1	VAMP5	BAIAP3	HLA-DMB	CD34	DKFZP434H132	PGM1	CCND3	TPSB2	WBSCR5