output by cost instead of # errors

[compbio]

Hi,

I am a post-doc in Stanford University, who is bioinformatician on cancer genomic field.
Thank you for making great program.
I am just wondering I can select records that have at most # cost instead of # errors.
This option enables me to differentiate between substitution and insertion/deletion.
It would help my research a lot!!

[Wikinaut]

Have you checked the numerous help pages http://www.tgries.de/agrep/agrephlp.html ?

[compbio]

Yes, I did and tried every options available. I still could not figure out.