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how to generate file for '--cnv-file' in plot-intraSVs fuction? #37

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7insong opened this issue Jun 1, 2024 · 1 comment
Open

how to generate file for '--cnv-file' in plot-intraSVs fuction? #37

7insong opened this issue Jun 1, 2024 · 1 comment

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@7insong
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7insong commented Jun 1, 2024

Hi, I want to use the 'plot-intraSVs' function, but how can I generate such a 'MCF7_merged.dedup.bam_ratio.bw' file for another dataset? I tried using the neoloopfinder 'calculate-cnv' to generate the '.CNV-profile.bedGraph' file, and then used 'bedGraphToBigWig' to convert it into a '.bw' file. However, in the resulting PNG, the CNV track is blank. How should I solve this problem?

@qolba
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qolba commented Aug 8, 2024

hello,
I stacked with the same problem. Have you found a solution?

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