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Hi, I want to use the 'plot-intraSVs' function, but how can I generate such a 'MCF7_merged.dedup.bam_ratio.bw' file for another dataset? I tried using the neoloopfinder 'calculate-cnv' to generate the '.CNV-profile.bedGraph' file, and then used 'bedGraphToBigWig' to convert it into a '.bw' file. However, in the resulting PNG, the CNV track is blank. How should I solve this problem?
The text was updated successfully, but these errors were encountered:
Hi, I want to use the 'plot-intraSVs' function, but how can I generate such a 'MCF7_merged.dedup.bam_ratio.bw' file for another dataset? I tried using the neoloopfinder 'calculate-cnv' to generate the '.CNV-profile.bedGraph' file, and then used 'bedGraphToBigWig' to convert it into a '.bw' file. However, in the resulting PNG, the CNV track is blank. How should I solve this problem?
The text was updated successfully, but these errors were encountered: