You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The cases describing the rejection of different events says the correct outcome of sufficient/insufficient reads but the case lettering is wrong
Steps to Reproduce
Run outrigger psi
Expected behavior:
Cases 10-12 should have "b" for the insufficient junction read cases
notes
Case 10b: Isoform1 with sufficient reads but Isoform2 has 1+ junctions with insufficient reads: There are insufficient junction reads 4357
Case 10a: Isoform1 with sufficient reads but Isoform2 has 1+ junctions with insufficient reads: There are sufficient junction reads 41156
Case 11b: Isoform1 has 1+ junction with insufficient reads but Isoform2 with sufficient reads: There are insufficient junction reads 399
Case 11a: Isoform1 has 1+ junction with insufficient reads but Isoform2 with sufficient reads: There are sufficient junction reads 35165
Case 12b: Isoform1 and Isoform2 each have both sufficient and insufficient junctions: There are insufficient junction reads 28
Case 12a: Isoform1 and Isoform2 each have both sufficient and insufficient junctions: There are sufficient junction reads 44
Case 3: All junctions with insufficient reads 138580
Case 4: Only one junction with sufficient reads 315170
Case 6: Unequal read coverage (one side has at least 10x more reads) 78678
Case 7: Exclusion 401051
Case 8: Inclusion 363210
Case 9: Sufficient reads on all junctions 39482
dtype: int64
Actual behavior:
notes
Case 10a: Isoform1 with sufficient reads but Isoform2 has 1+ junctions with insufficient reads: There are insufficient junction reads 4357
Case 10a: Isoform1 with sufficient reads but Isoform2 has 1+ junctions with insufficient reads: There are sufficient junction reads 41156
Case 11a: Isoform1 has 1+ junction with insufficient reads but Isoform2 with sufficient reads: There are insufficient junction reads 399
Case 11a: Isoform1 has 1+ junction with insufficient reads but Isoform2 with sufficient reads: There are sufficient junction reads 35165
Case 12a: Isoform1 and Isoform2 each have both sufficient and insufficient junctions: There are insufficient junction reads 28
Case 12a: Isoform1 and Isoform2 each have both sufficient and insufficient junctions: There are sufficient junction reads 44
Case 3: All junctions with insufficient reads 138580
Case 4: Only one junction with sufficient reads 315170
Case 6: Unequal read coverage (one side has at least 10x more reads) 78678
Case 7: Exclusion 401051
Case 8: Inclusion 363210
Case 9: Sufficient reads on all junctions 39482
dtype: int64
Versions
$ outrigger --version
outrigger 1.0.0dev
$ uname --all
Linux tscc-login2.sdsc.edu 2.6.32-642.6.1.el6.x86_64 #1 SMP Wed Oct 5 00:36:12 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
The text was updated successfully, but these errors were encountered:
Description
The cases describing the rejection of different events says the correct outcome of sufficient/insufficient reads but the case lettering is wrong
Steps to Reproduce
outrigger psi
Expected behavior:
Cases 10-12 should have "b" for the insufficient junction read cases
Actual behavior:
Versions
The text was updated successfully, but these errors were encountered: