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dependencies.txt
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dependencies.txt
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R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /share/software/user/open/openblas/0.2.19/lib/libopenblasp-r0.2.19.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] magrittr_2.0.1 BSgenome.Hsapiens.UCSC.hg19_1.4.0
[3] BSgenome_1.54.0 rtracklayer_1.46.0
[5] Biostrings_2.54.0 XVector_0.26.0
[7] GenomicRanges_1.38.0 GenomeInfoDb_1.22.1
[9] IRanges_2.20.2 S4Vectors_0.24.4
[11] BiocGenerics_0.32.0 kableExtra_1.3.1
[13] forcats_0.5.0 knitr_1.30
[15] qqman_0.1.4 fastmatch_1.1-0
[17] pryr_0.1.4 purrr_0.3.3
[19] snpStats_1.36.0 survival_2.44-1.1
[21] data.table_1.13.6 KRLS_1.0-0
[23] iRF_3.0.0 ranger_0.12.1
[25] caret_6.0-86 ggplot2_3.3.0
[27] lattice_0.20-38 glmnet_3.0-2
[29] Matrix_1.3-2 tibble_3.0.3
[31] stringr_1.4.0 tidyselect_1.1.0
[33] PRROC_1.3.1 tidyr_1.0.2
[35] dplyr_1.0.2 vdocs_0.0.0.9000
[37] vthemes_0.0.0.9000
loaded via a namespace (and not attached):
[1] colorspace_2.0-0 ellipsis_0.3.1
[3] class_7.3-15 rstudioapi_0.13
[5] prodlim_2019.11.13 fansi_0.4.1
[7] lubridate_1.7.4 xml2_1.3.2
[9] codetools_0.2-16 splines_3.6.1
[11] doParallel_1.0.15 jsonlite_1.7.2
[13] Rsamtools_2.2.3 pROC_1.17.0.1
[15] shiny_1.4.0 compiler_3.6.1
[17] httr_1.4.2 assertthat_0.2.1
[19] fastmap_1.1.1 cli_2.2.0
[21] later_1.1.0.1 htmltools_0.5.5
[23] tools_3.6.1 gtable_0.3.0
[25] glue_1.4.2 GenomeInfoDbData_1.2.2
[27] reshape2_1.4.3 doRNG_1.8.2
[29] Rcpp_1.0.5 Biobase_2.46.0
[31] vctrs_0.3.4 nlme_3.1-140
[33] iterators_1.0.13 crosstalk_1.0.0
[35] timeDate_3043.102 gower_0.2.2
[37] xfun_0.24 rvest_0.3.5
[39] mime_0.9 miniUI_0.1.1.1
[41] lifecycle_0.2.0 rngtools_1.5
[43] XML_3.99-0.3 zlibbioc_1.32.0
[45] MASS_7.3-51.4 scales_1.1.0
[47] ipred_0.9-9 promises_1.1.0
[49] SummarizedExperiment_1.16.1 RColorBrewer_1.1-2
[51] memoise_1.1.0 rpart_4.1-15
[53] calibrate_1.7.7 stringi_1.5.3
[55] foreach_1.5.1 BiocParallel_1.20.1
[57] manipulateWidget_0.10.1 lava_1.6.8.1
[59] shape_1.4.5 matrixStats_0.57.0
[61] rlang_1.1.0 pkgconfig_2.0.3
[63] bitops_1.0-6 rgl_0.100.50
[65] evaluate_0.14 GenomicAlignments_1.22.1
[67] recipes_0.1.10 htmlwidgets_1.5.1
[69] AUC_0.3.0 plyr_1.8.6
[71] R6_2.5.0 generics_0.1.0
[73] DelayedArray_0.12.3 pillar_1.4.3
[75] withr_2.3.0 RCurl_1.98-1.2
[77] nnet_7.3-12 crayon_1.3.4
[79] rmarkdown_2.9 grid_3.6.1
[81] ModelMetrics_1.2.2.2 digest_0.6.27
[83] webshot_0.5.2 xtable_1.8-4
[85] httpuv_1.5.2 munsell_0.5.0
[87] viridisLite_0.3.0