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Makefile
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Makefile
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PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
PKGSRC := $(shell basename `pwd`)
BIOCVER := RELEASE_3_20
all: rd check clean
for-release: rd check-dontrun clean readme
alldocs: rd readme
rd:
Rscript -e 'library(methods); devtools::document()'
# Rscript -e 'roxygen2::roxygenise(".")'
readme:
Rscript -e 'rmarkdown::render("README.Rmd", encoding="UTF-8")'
sticker:
Rscript -e 'source("ggtree_sticker.R")';
rm Rplots.pdf
build:
# cd ..;\
# R CMD build $(PKGSRC)
Rscript -e 'devtools::build()'
build2:
cd ..;\
R CMD build --no-build-vignettes $(PKGSRC)
install:
cd ..;\
R CMD INSTALL $(PKGNAME)_$(PKGVERS).tar.gz
check: rd
#cd ..;\
#Rscript -e "rcmdcheck::rcmdcheck('$(PKGNAME)_$(PKGVERS).tar.gz')"
Rscript -e 'devtools::check()'
check-dontrun: build
cd ..;\
Rscript -e 'rcmdcheck::rcmdcheck("$(PKGNAME)_$(PKGVERS).tar.gz", args=c("--run-dontrun"))'
check2: rd build
cd ..;\
R CMD check $(PKGNAME)_$(PKGVERS).tar.gz
check3: rd build2
cd ..;\
R CMD check --ignore-vignettes $(PKGNAME)_$(PKGVERS).tar.gz
bioccheck:
cd ..;\
Rscript -e "BiocCheck::BiocCheck('$(PKGNAME)_$(PKGVERS).tar.gz')"
clean:
cd ..;\
$(RM) -r $(PKGNAME).Rcheck/
gitmaintain:
git gc --auto;\
git prune -v;\
git fsck --full
biocinit:
git remote add upstream git@git.bioconductor.org:packages/$(PKGNAME).git;\
git fetch --all
giteeinit:
git remote add gitee git@gitee.com:GuangchuangYu/$(PKGNAME).git;\
git fetch --all
rmrelease:
git branch -D $(BIOCVER)
release:
git checkout $(BIOCVER);\
git fetch --all
yulab:
git push yulab devel
update:
git fetch --all;\
git checkout devel;\
git merge upstream/devel;\
git merge origin/devel;\
git merge yulab/devel
push:
git push upstream devel;\
git push yulab devel;\
git push origin devel
# svnignore:
# svn propset svn:ignore -F .svnignore .
# svncommit:
# git checkout devel;\
# git svn rebase;\
# git merge devel --log;\
# git svn dcommit;\
# git push -u origin devel;\
# git checkout devel;\
# git merge devel