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sourmash gather run out of memory at k=21 for some samples. #87

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zxl124 opened this issue Jan 19, 2024 · 0 comments
Open

sourmash gather run out of memory at k=21 for some samples. #87

zxl124 opened this issue Jan 19, 2024 · 0 comments

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@zxl124
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zxl124 commented Jan 19, 2024

With k=21, sourmash gather requires more memory for some samples. Right now, this process starts with 60G, then try again at 120G, then stops trying. We should consider starting at higher memory for k=21, and maybe set maxRetries to 2 for this step.

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