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Convert iPAGE results to gene-pathway KG #4

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abearab opened this issue Nov 30, 2023 · 1 comment
Open

Convert iPAGE results to gene-pathway KG #4

abearab opened this issue Nov 30, 2023 · 1 comment

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@abearab
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abearab commented Nov 30, 2023

related to goodarzilab/pypage#30

I created a module for TDC that makes a knowledge graph object – mims-harvard/TDC#207. So, pyPAGE results can be used to make gene-pathway graph and saved in TDC-KG object. Then, there are methods implemented to convert them into igraph / networkx objects. From a biology point of view, the network / graph representation compatible with these tools can enable other type of graph analysis from pypage results.

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