crontab.sh

#!/bin/bash
#set -x
export PRFDB_HOME=/Users/dinmanlab/prfdb
cd $PRFDB_HOME
export OUTPUT="$PRFDB_HOME/crontab.out"
string="Started at: `date`"
echo "$string" >> $OUTPUT
if [ $1 ]; then
#  ./prf_daemon --dbexec "INSERT IGNORE INTO gene_info (genome_id, accession, species, genename, comment, defline) SELECT id, accession, species, genename, comment, defline FROM genome"
   echo "Dropped the insert ignore for the moment"
else
  cd $PRFDB_HOME && ./prf_daemon --mysql_backup 2>>$OUTPUT 1>&2 &
  cd $PRFDB_HOME/folds && rm -f *.err *.svg *.html *.ext *-auth *.png *.seq *fasta *.ct *.dG *.plot *.run *.bpseq 2>/dev/null 1>&2
  cd $PRFDB_HOME/sessions && find $PRFDB_HOME/sessions -mtime -7 -exec rm {} ';'
  #cd $PRFDB_HOME && ./prf_daemon --maintain 2>>crontab.out 1>&2
fi
string="Finished at: `date`"
echo "$string" >>  $OUTPUT