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non-fatal ERROR: BUSCO and GeneMarkST fail #22
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mariamadrid19
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non-fatal ERROR: BUSCO and GeneMark
non-fatal ERROR: BUSCO and GeneMarkST fail
Nov 21, 2023
Dear @mariamadrid19
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Hello! I'm trying to use rnaQUAST on my data. When I run rnaquast --test it works perfectly:
Finished: 2023-11-21 21:32:02
Elapsed time: 0:03:24.335269
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0
Thank you for using rnaQUAST!
But when I run it on my own data, I get this error:
Finished: 2023-11-21 21:25:46
Elapsed time: 0:00:01.313193
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 2
non-fatal ERRORs:
non-fatal ERROR: run_BUSCO.py failed for transcripts.fasta!
non-fatal ERROR: GeneMarkS-T failed for transcripts.fasta!
Thank you for using rnaQUAST!
when I check the logs they say:
/bin/sh: run_BUSCO.py: command not found
/bin/sh: gmst.pl: command not found
What might be my problem? I am certain I have both BUSCO and GeneMark installed in my server. Thanks a lot!
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