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Spades fails to compile from source on an aws r7i.2xlarge instance #1362
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@wiebepo Does this reproduce only on this kind of instance? And no problem on smaller ones? |
We cloned the server on an r6i.2xlarge instance, and the job succeeds. It is the predecessor and is also 8 vCPUs and 64 GiB RAM; however, it uses DDR4 memory. Not sure if this matters. |
FWIW this error from the attached log seemed to be the most relevant:
|
Yes, exactly. This is why I asked if the problem reproduced on smaller instance. |
Will you please provide the output of the following commands on that instance?
Thanks! |
Added to the dockerfile, and rerun:
Output:107520K |
I filled upstream issue with blaze, let's see what they will say. IMO this static assert does not make much sense |
Description of bug
We migrated our Jenkins server to an r7i.2xlarge instance (8 vCPU, 64 GiB, DDR5 memory). One of our Jenkins jobs includes building spades from source. Here is an excerpts of the docker file:
spades.log
spades.log
params.txt
no log available. Failure occurs during compilation.
SPAdes version
SPades version 4.0.0
Operating System
Ubuntu 22.04
Python Version
3.10.12
Method of SPAdes installation
compile from source
No errors reported in spades.log
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