forked from sandywang/conglomerate
-
Notifications
You must be signed in to change notification settings - Fork 0
/
ChangeLog
278 lines (190 loc) · 8.91 KB
/
ChangeLog
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
2011-04-27 Claude Lepage <claude@bic.mni.mcgill.ca>
* fixed bug in sphere_resample_obj for parsing of lines with
leading spaces
2009-11-20 Claude Lepage <claude@bic.mni.mcgill.ca>
* extended mincdefrag for large volumes
2008-12-19 Claude Lepage <claude@bic.mni.mcgill.ca>
* added rgb to volume_object_evaluate for DTI maps
2008-01-08 Claude Lepage <claude@bic.mni.mcgill.ca>
* added sphere_resample_obj.in for resampling an object
2007-12-20 Claude Lepage <claude@bic.mni.mcgill.ca>
* removed -mask_binvalue from mincmask.c and fixed the old way of
thresholding for the mask
* removed stx_segment and moved it to registration package
2007-10-15 Claude Lepage <claude@bic.mni.mcgill.ca>
* move all obj tools to bicpl/tools where they should belong
2007-05-31 Claude Lepage <claude@bic.mni.mcgill.ca>
* fixed convex_hull.c
* fixed surface_mask.c and surface_mask2.c to save output with same dimensions
order as original image (was always z, y, x before)
* added -mask_binvalue to mincmask.c
* fixed stx_segment to use mincmask with -mask_binvalue
* created clean_surface_labels.c
2007-01-30 Claude Lepage <claude@bic.mni.mcgill.ca>
* add icbm_make_templates.pl
2006-06-22 Claude Lepage <claude@bic.mni.mcgill.ca>
* modify multispectral_stx_registration for new pipeline
* use model icbm_avg_152_t1_tal_nlin_symmetric_VI in nlfit_smr
2006-06-01 Claude Lepage <claude@bic.mni.mcgill.ca>
* fix a cast in dump_vertex_normal_diffs.c
2006-05-12 Claude Lepage <claude@bic.mni.mcgill.ca>
* create new convert_object to toggle file format between ascii/binary
for surface .obj files.
* Bump version to 1-6-3.
2006-05-04 Claude Lepage <claude@bic.mni.mcgill.ca>
* Change perl scripts from .pl to .in and remove path dependencies
* Bump version to 1-6-2.
2006-04-10 Claude Lepage <claude@bic.mni.mcgill.ca>
* Fix the same small bug in mincdefrag and mincskel for image
bounds checking
* Bump version to 1-6-1.
2006-03-17 Claude Lepage <claude@bic.mni.mcgill.ca>
* Add mincdefrag and mincskel
* Bump version to 1-6.
2006-02-26 Jonathan Harlap <jharlap@bic.mni.mcgill.ca>
* Update version to 1.5
2005-11-09 Jonathan Harlap <jharlap@bic.mni.mcgill.ca>
* Add print_world_values
2005-10-27 Andrew Janke <a.janke@gmail.com>
* updated smooth_mask.pl to use mni_perllib
2005-08-15 Bert Vincent <bert@bic.mni.mcgill.ca>
* Add regional_thickness and remap_to_lobes
2005-05-31 Bert Vincent <bert@bic.mni.mcgill.ca>
* Fix smooth_mask to use DefaultArgs as it used to.
2005-05-30 Bert Vincent <bert@bic.mni.mcgill.ca>
* Add suppress_fat
* More fixes to multispectral_stx_registration.pl
2005-05-26 Bert Vincent <bert@bic.mni.mcgill.ca>
* Add mincmask
* More minor build tweaks
2005-05-25 Bert Vincent <bert@bic.mni.mcgill.ca>
* Build fixes
* Added orphan perl scripts
2005-03-18 Andrew Janke <a.janke@gmail.com>
* replaced all sqrtf()'s with sqrt() for OSX build
2005-03-01 Bert Vincent <bert@bic.mni.mcgill.ca>
* Added normalize_pet
2004-04-22 Bert Vincent <bert@bic.mni.mcgill.ca>
* Added find_peaks
* Update version to 1.4
2004-04-07 Bert Vincent <bert@bic.mni.mcgill.ca>
* Added match_tags
2004-02-05 Jason Lerch <jason@bic.mni.mcgill.ca>
* surface_mask2 now outputs volumes in the same dimension order as
the input volume.
2003-11-17 Steve ROBBINS <stever@bic.mni.mcgill.ca>
* COPYING: New. License text copied from bicpl.
* ParseArgv.c:
* ParseArgv.h: Remove. These files are now installed as part of minc.
* Makefile.am (volume_object_evaluate_SOURCES): Remove ParseArgv.c.
2003-10-14 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* ascii_binary.c: Delete. This program was moved to package
bicpl on 2001-04-02 and the former is a prerequisite of this
package.
* Makefile.am (bin_PROGRAMS): Remove ascii_binary.
2003-09-08 Jason Lerch <jason@bic.mni.mcgill.ca>
* added a -output_binary_mask option to surface_mask2
2003-08-29 Jason Lerch <jason@bic.mni.mcgill.ca>
* fixed a bug in surface_mask2 which caused it to fail when the
histogram of the input volume was skewed and the volume had a
datatype other than NC_BYTE. Now reads in volume using
MI_ORIGINAL_TYPE.
2003-04-30 Steve ROBBINS <stever@bic.mni.mcgill.ca>
* average_objects.c: Completed the code.
2003-03-02 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* configure.ac: Set version to 1.3.
2003-03-02 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
Release 1.2.
* flatten_polygons.c:
* fit_curve2.c:
* colour_object.c:
* two_surface_resample.c (main):
* refine_mesh.c (main):
* compute_bounding_view.c (main):
* box_filter_volume_nd.c (box_filter_volume):
* box_filter_volume.c (main): Remove unused variable declarations.
* surface_mask2.c:
* make_line_links.c:
* fit_3d.c:
* fit_curve.c:
* find_buried_surface.c: Remove unused function declarations.
2003-02-25 Steve ROBBINS <stever@diomedes.bic.mni.mcgill.ca>
* surface_mask2.c (main): Return zero on success.
2003-01-25 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* configure.ac: Set version to 1.2.
2003-01-25 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* configure.ac: Set version to 1.1.
* Makefile.am (m4_files): Add m4/smr_CGAL_MAKEFILE.m4.
2002-04-06 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* marching_cubes: Get the voxel_to_world_transform from
volume_input structure. Patch from John Sled.
* Makefile.am (bin_PROGRAMS): Add marching_cubes.
2002-04-06 Steve M. Robbins <stever@bic.mni.mcgill.ca>
* marching_cubes.c: Copied the RCS file
~david/Source/Marching_cubes/RCS/marching_cubes.c,v to the CVS
repository. After checkout, copied the (unchecked-in)
marching_cubes.c file overtop.
2001-11-12 Jason Lerch <jason@bic.mni.mcgill.ca>
* added ParseArgv.{c,h}
* volume_object_evaluate.c: added ParseArgv includes, added
options letting the user specify whether they want to use linear,
nearest_neighbour, or cubic interpolation in the evaluation.
* Makefile.am: added volume_object_evaluate_SOURCES with
ParseArgv.c
2001-11-07 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* make_gradient_volume.c (main): Correct parameter ordering
for create_gradient_volume() call.
(create_gradient_volume): Output magnitude rather than squared
magnitude. Set the real_range on output volume correctly.
2001-10-28 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* mincresample.c:
* mincresample.h: Removed. Was a 1996 version of the files from
MINC.
* Makefile.am: Removed all traces of mincresample. Add
AUTOMAKE_OPTIONS, ACLOCAL_AMFLAGS and EXTRA_DIST so that
"make distcheck" works.
* tagtominc.c (main): Bugfix. Pass tag_id as the structure
ID list, not the patient ID list.
* README: New. Describes the usage of some of these
utilities.
* TODO:
* NEWS: New.
* configure.ac: Use AC_PROG_LIBTOOL instead of AM_.
* autogen.sh: Add explanatory text if directory m4 is not present.
2001-10-22 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* *.c: Replace <internal_volume_io.h> by
<volume_io/internal_volume_io.h>. Replace <images.h> and
<numerical.h> by <bicpl/...>.
* configure.in: Do not check for header <numerical.h>, nor for
<internal_volume_io.h>. Do not probe for C++ compiler.
2001-09-24 Jason Lerch <jason@bic.mni.mcgill.ca>
* minc_to_rgb.c: Changed UNSIGNED_LONG to UNSIGNED_INT
2001-09-06 Jason Lerch <jason@bic.mni.mcgill.ca>
* surface_mask2: Changed the logic so that an explicity binary
volume is created which is used to mask the original volume. Also
forced the inclusion of the object boundaries in the mask.
2001-06-04 Peter Neelin <neelin@bic.mni.mcgill.ca>
* print_all_label_bounding_boxes: Fixed test for y_max that was
testing against the xw coordinate, rather than yw.
2001-05-11 Steve M. Robbins <steve@nyongwa.montreal.qc.ca>
* Update: Add files in ~david/Source/Batch_processing that did not
have an associated RCS file. Add subdirectories Conglomerate and
Csh. The files "test.obj" and "tt.obj" were converted to ascii
format. Other obvious junk was removed, mostly files full of
curvature numbers, and the like. This is tagged with
David-2001-05-11.
* Update: Updated all the current files from the checked-out
versions in ~david/Source/Batch_processing. This is tagged with
David-RCS-update.
* RCS: The first import into CVS is a straight copy of
~david/Source/Batch_processing/RCS, plus this ChangeLog file.
This collection of files is tagged David-RCS.
* symlinks: The following symlinks were replaced by their target
files: test.obj, tt.obj.
* symlinks: The following symlinks were removed:
00100_81920.obj.gz, 00101, MNE.mnc,
phantom_1-0mm_normal_wht_20480.obj, 00100_20480.obj.gz.
* Batch_processing: Copied all of ~david/Source/Batch_processing
except "RCS/test_dynamic.c,v" and "sean", which were
read-protected. Both files are old, dating to February 1996. For
"test_dynamic.c", the checked-out file is newer, in any case.