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I personally never hit this limitation but I'm happy to accept a PR.
Should easily be doable by iterating over the pages ?per_page=100&page=n and concatenating the responses.
Current perPage limit is 100 in Gitlab, and the script use 9999, thus fetching no more than 100 repositories.
https://docs.gitlab.com/ee/api/rest/index.html#pagination
https://github.com/adroste/gitlab-clone-group/blob/main/gitlab-clone-group.py#L17
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