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Implement the pvalue function into variantspark pipeline once the methodology and R scripts are completed by Rob Dunne.
Get feedback from key users (letitia, priya on most user friendly approach to integration). Piotr's current suggestion: output the table of variants in HAIL notebook to include column with counts for how many time a variant has split a tree. use that as input to separate function to plot distribution, with options of which distribution to fit, followed by pvalue result with user input of fdr threshold
The text was updated successfully, but these errors were encountered:
Implement the pvalue function into variantspark pipeline once the methodology and R scripts are completed by Rob Dunne.
Get feedback from key users (letitia, priya on most user friendly approach to integration). Piotr's current suggestion: output the table of variants in HAIL notebook to include column with counts for how many time a variant has split a tree. use that as input to separate function to plot distribution, with options of which distribution to fit, followed by pvalue result with user input of fdr threshold
The text was updated successfully, but these errors were encountered: