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AllTheBacteria update? #79

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bartns opened this issue Aug 1, 2024 · 3 comments
Open

AllTheBacteria update? #79

bartns opened this issue Aug 1, 2024 · 3 comments

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@bartns
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bartns commented Aug 1, 2024

Nice resource!
Any plans on giving it an update with AllTheBacteria ? (an additional 1,271,428 new assemblies)

AllTheBacteria - all bacterial genomes assembled, available and searchable (biorxiv)
Martin Hunt, Leandro Lima, Wei Shen, John Lees, Zamin Iqbal

@oschwengers
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Hi and thanks for reaching out.
Yes, indeed - we're planning an update based on the AllTheBacteria project, and actually, we've already started the data processing, so stay tunded ;-)

@bartns
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bartns commented Aug 22, 2024

That's amazing! Will stay tuned :)

@jjkoehorst
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@oschwengers do you happen to have an update? For a research project we are planning to explore GTDB or perhaps this resource and we would like to use bakta for the complete annotation before turning it into a graph database for exploration.

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