.travis.yml

language: python
python:
  - 3.6
  - 3.7

os:
  - linux
dist: xenial
sudo: required

matrix:
  include:
        - os: osx
          osx_image: xcode10.1
          language: generic
          env:
          - PYTHON=3.6
        - os: osx
          osx_image: xcode10.1
          language: generic
          env:
          - PYTHON=3.7


before_install:
  - sudo chmod +x .travis/install.sh && sudo chown $USER .travis/install.sh && /bin/bash .travis/install.sh

install:
  - hash -r
  - export PATH="$HOME/miniconda/bin:$PATH"
#  - export PATH="$HOME/miniconda/envs/test-environment/bin:$PATH"
  - echo $PATH
  - source activate test-environment
  - ls -l $HOME/miniconda/envs/test-environment/bin
  - travis_wait 30 pip install -e .
  - conda install -c gurobi gurobi

script:
  - which python
  - python -c "import gurobi"
  - rck --help
  - rck-adj-x2rck --help
  - rck-adj-x2rck sniffles --help
  - rck-adj-x2rck lumpy --help
  - rck-adj-x2rck longranger --help
  - rck-adj-x2rck naibr --help
  - rck-adj-x2rck manta --help
  - rck-adj-x2rck grocsv --help
  - rck-adj-x2rck delly --help
  - rck-adj-x2rck pbsv --help
  - rck-adj-x2rck remixt --help
  - rck-adj-process --help
  - rck-adj-process cat --help
  - rck-adj-process reciprocal --help
  - rck-adj-process filter --help
  - rck-scnt-x2rck --help
  - rck-scnt-x2rck titan --help
  - rck-scnt-x2rck battenberg --help
  - rck-scnt-x2rck hatchet --help
  - rck-scnt-x2rck remixt --help