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thermostability.json
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/
thermostability.json
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{
"dataset":
{
"dataset": "data/thermostability.txt",
"sequence_col": "sequence",
"activity": "T50"
},
"model":
{
"algorithm": "plsregression",
"parameters": {},
"test_split": 0.2
},
"descriptors":
{
"descriptors_csv": "descriptors_thermostability.csv",
"moreaubroto_autocorrelation":
{
"lag": 30,
"properties": ["CIDH920105", "BHAR880101", "CHAM820101", "CHAM820102",
"CHOC760101", "BIGC670101", "CHAM810101", "DAYM780201"],
"normalize": 1
},
"moran_autocorrelation":
{
"lag": 30,
"properties": ["CIDH920105", "BHAR880101", "CHAM820101", "CHAM820102",
"CHOC760101", "BIGC670101", "CHAM810101", "DAYM780201"],
"normalize": 1
},
"geary_autocorrelation":
{
"lag": 30,
"properties": ["CIDH920105", "BHAR880101", "CHAM820101", "CHAM820102",
"CHOC760101", "BIGC670101", "CHAM810101", "DAYM780201"],
"normalize": 1
},
"ctd":
{
"property": "hydrophobicity",
"all": 0
},
"sequence_order_coupling_number":
{
"lag": 30,
"distance_matrix": "schneider-wrede"
},
"quasi_sequence_order":
{
"lag": 30,
"weight": 0.1,
"distance_matrix": "schneider-wrede"
},
"pseudo_amino_acid_composition":
{
"lambda": 30,
"weight": 0.05,
"properties": []
},
"amphiphilic_pseudo_amino_acid_composition":
{
"lambda": 30,
"weight": 0.5
}
},
"pyDSP":
{
"use_dsp": 0,
"spectrum": "power",
"window": {
"type": "hamming",
"sym": 1,
"beta": null,
"alpha": null,
"nbar": null,
"sll": null,
"norm": null,
"std": null
},
"filter": {
"type": null,
"window_length": 5,
"polyorder": 2,
"deriv": 0,
"delta": 1,
"mode": "interp"
}
}
}