build.gradle

import com.github.jengelman.gradle.plugins.shadow.tasks.ShadowJar

buildscript {
    repositories {
        mavenLocal()
        mavenCentral()
        jcenter()
    }
    dependencies {
        classpath group: 'net.researchgate', name: 'gradle-release', version: '2.6.0'
        classpath 'org.kt3k.gradle.plugin:coveralls-gradle-plugin:2.4.0'
        classpath 'com.jfrog.bintray.gradle:gradle-bintray-plugin:1.7.3'
        classpath 'com.github.jengelman.gradle.plugins:shadow:5.0.0'
        classpath("org.springframework.boot:spring-boot-gradle-plugin:2.1.7.RELEASE")
    }
}

repositories {
    mavenCentral()
}


apply plugin: 'net.researchgate.release'

allprojects {
    apply plugin: 'jacoco'
    apply plugin: 'base'
    apply plugin: 'com.github.kt3k.coveralls'

    group = "fr.inria.anhalytics"

    jacoco {
        toolVersion = '0.7.1.201405082137'
    }

    tasks.withType(JavaCompile) {
        options.encoding = 'UTF-8'
    }
}

subprojects {
    apply plugin: 'java'
    apply plugin: 'maven'
    apply plugin: 'com.jfrog.bintray'

    sourceCompatibility = 1.8
    targetCompatibility = 1.8

    repositories {
        mavenCentral()
        jcenter()
        maven { url "https://dl.bintray.com/rookies/maven" }
//        repositories {
//            maven {
//                url new File(rootProject.rootDir, "grobid-core/lib")
//            }
//        }
    }

    configurations {
        all*.exclude group: 'org.slf4j', module: "slf4j-log4j12"
        all*.exclude group: 'log4j', module: "log4j"
        all*.exclude group: 'org.springframework.boot', module: 'spring-boot-starter-logging'
    }

    dependencies {

        testCompile "junit:junit:4.12"
        testCompile "org.easymock:easymock:3.4"
        testCompile "org.powermock:powermock-api-easymock:1.6.6"
        testCompile "org.powermock:powermock-module-junit4:1.6.6"
        testCompile "xmlunit:xmlunit:1.6"
        testCompile "org.hamcrest:hamcrest-all:1.3"
    }

    task sourceJar(type: Jar) {
        description = 'A jar that contains source code'
        classifier = 'sources'
        from project.sourceSets.main.java
    }

    artifacts {
        archives sourceJar
    }

    jacocoTestReport {
        additionalSourceDirs = files(sourceSets.main.allSource.srcDirs)
        sourceDirectories = files(sourceSets.main.allSource.srcDirs)
        classDirectories = files(sourceSets.main.output)
        reports {
            html.enabled = true
            xml.enabled = true
            csv.enabled = false
        }
    }

    test {
        testLogging.showStandardStreams = true
        // enable for having separate test executor for different tests
        //  forkEvery = 1
        maxHeapSize = "1024m"
        exclude '**/**IntegrationTest**'
    }
}

project("anhalytics-commons") {
    apply plugin: 'com.github.johnrengelman.shadow'

    dependencies {
        compile(group: 'xml-apis', name: 'xml-apis', version: '1.4.01') {
            // otherwise xml-apis 2.0.1 will come from XOM and will result in
            // java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
            //TODO: sort out this problem better
            force = true
        }

        compile group: 'org.slf4j', name: 'slf4j-api', version: '1.7.25'

        compile "org.mongodb:mongo-java-driver:3.9.0"
        compile "mysql:mysql-connector-java:5.1.40"

        compile "commons-io:commons-io:2.5"
        compile "org.apache.commons:commons-lang3:3.6"

        compile "com.fasterxml.jackson.core:jackson-core:2.9.6"
        compile "com.fasterxml.jackson.core:jackson-databind:2.9.6"
        compile "com.fasterxml.jackson.core:jackson-annotations:2.9.6"

        compile group: 'org.slf4j', name: 'slf4j-api', version: '1.7.7'
    }

    shadowJar {
        classifier = 'onejar'
        mergeServiceFiles()
        zip64 true
        manifest {
            attributes 'Main-Class': 'fr.inria.anhalytics.commons.main.Main'
        }

    }

    task mainJar(type: ShadowJar) {
        zip64 true
        mergeServiceFiles()
        from sourceSets.main.output
    }

    jar {
        dependsOn mainJar
        enabled false
    }

    artifacts {
        archives shadowJar
        archives mainJar
    }
}

project("anhalytics-harvest") {
    apply plugin: 'com.github.johnrengelman.shadow'
    apply plugin: 'java'
    apply plugin: 'eclipse'
    apply plugin: 'idea'
    apply plugin: 'org.springframework.boot'
    apply plugin: 'io.spring.dependency-management'

    bootJar {
        baseName = 'fileprovider-rest-service'
    }

    tasks.test.workingDir = rootProject.rootDir


    configurations {
        all*.exclude group: 'org.slf4j', module: "slf4j-log4j12"
        all*.exclude group: 'org.slf4j', module: "slf4j-simple"
    }

    dependencies {

        compile project(':anhalytics-commons')
        compile "org.apache.httpcomponents:httpmime:4.2.4"
        compile "com.googlecode.json-simple:json-simple:1.1"

//        compile "com.sun.jersey:jersey-core:1.9"
//        compile "com.sun.jersey:jersey-server:1.9"
//        compile "directory-naming:naming-java:0.8"

        compile "com.google.guava:guava:16.0.1"

        compile group: 'org.slf4j', name: 'slf4j-api', version: '1.7.7'
        compile("org.springframework.boot:spring-boot-starter-web")
        compile 'org.springframework.boot:spring-boot-starter-log4j2'

        testCompile('org.springframework.boot:spring-boot-starter-test')
        testCompile('com.jayway.jsonpath:json-path')
    }

    shadowJar {
        classifier = 'onejar'
        mergeServiceFiles()
        zip64 true
        manifest {
            attributes 'Main-Class': 'fr.inria.anhalytics.harvest.main.Main'
        }

    }

    task mainJar(type: ShadowJar) {
        zip64 true
        mergeServiceFiles()
        from sourceSets.main.output
    }

    jar {
        dependsOn mainJar
        enabled false
    }

    artifacts {
        archives shadowJar
        archives mainJar
    }
}

project("anhalytics-annotate") {
    apply plugin: 'com.github.johnrengelman.shadow'

    dependencies {
        compile project(':anhalytics-commons')

        compile('com.scienceminer.nerd:entity-fishing-client:0.0.2')
        compile group: 'commons-io', name: 'commons-io', version: '2.5'
        compile group: 'org.apache.httpcomponents', name: 'httpmime', version: '4.5.6'
        runtime group: 'org.slf4j', name: 'slf4j-api', version: '1.7.7'
        runtime group: 'org.apache.logging.log4j', name: 'log4j-slf4j-impl', version: '2.11.1'
    }

    shadowJar {
        classifier = 'onejar'
        mergeServiceFiles()
        zip64 true
        manifest {
            attributes 'Main-Class': 'fr.inria.anhalytics.annotate.main.Main'
        }

    }

    task mainJar(type: ShadowJar) {
        zip64 true
        mergeServiceFiles()
        from sourceSets.main.output
    }

    jar {
        dependsOn mainJar
        enabled false
    }

    artifacts {
        archives shadowJar
        archives mainJar
    }
}

project("anhalytics-kb") {
    apply plugin: 'com.github.johnrengelman.shadow'

    dependencies {

        compile project(':anhalytics-commons')
        compile group: 'org.codehaus.woodstox', name: 'stax2-api', version: '3.1.4'
        compile group: 'org.codehaus.woodstox', name: 'woodstox-core-asl', version: '4.4.0'

        compile group: 'org.apache.commons', name: 'commons-lang3', version: '3.5'

        runtime group: 'org.slf4j', name: 'slf4j-api', version: '1.7.7'
//        runtime group: 'org.apache.logging.log4j', name: 'log4j-core', version: '2.11.1'
        runtime group: 'org.apache.logging.log4j', name: 'log4j-slf4j-impl', version: '2.11.1'
    }

    shadowJar {
        classifier = 'onejar'
        mergeServiceFiles()
        zip64 true
        manifest {
            attributes 'Main-Class': 'fr.inria.anhalytics.kb.main.Main'
        }

    }

    task mainJar(type: ShadowJar) {
        zip64 true
        mergeServiceFiles()
        from sourceSets.main.output
    }

    jar {
        dependsOn mainJar
        enabled false
    }

    artifacts {
        archives shadowJar
        archives mainJar
    }
}

project("anhalytics-index") {
    apply plugin: 'com.github.johnrengelman.shadow'

    dependencies {

        compile project(':anhalytics-commons')

        compile group: 'commons-io', name: 'commons-io', version: '2.5'
        compile group: 'org.apache.commons', name: 'commons-lang3', version: '3.5'

        runtime group: 'org.slf4j', name: 'slf4j-api', version: '1.7.7'
        runtime group: 'org.apache.logging.log4j', name: 'log4j-slf4j-impl', version: '2.11.1'

        compile "com.fasterxml.jackson.core:jackson-core:2.9.6"
        compile "com.fasterxml.jackson.core:jackson-databind:2.9.6"
        compile "com.fasterxml.jackson.core:jackson-annotations:2.9.6"

        compile "org.json:json:20080701"

        compile "org.elasticsearch:elasticsearch:5.2.2"
        compile "org.elasticsearch.client:transport:5.2.2"

        compile "org.mongodb:mongo-java-driver:3.9.0"

        compile group: 'mysql', name: 'mysql-connector-java', version: '5.1.40'
    }

    shadowJar {
        classifier = 'onejar'
        mergeServiceFiles()
        zip64 true
        manifest {
            attributes 'Main-Class': 'fr.inria.anhalytics.index.main.Main'
        }

    }

    task mainJar(type: ShadowJar) {
        zip64 true
        mergeServiceFiles()
        from sourceSets.main.output
    }

    jar {
        dependsOn mainJar
        enabled false
    }

    artifacts {
        archives shadowJar
        archives mainJar
    }
}
// coveralls does not support mutimodule, therefore merging reports
task jacocoRootReport(type: JacocoReport) {
    dependsOn = [subprojects.test
//                 subprojects.jacocoTestReport
    ]
    additionalSourceDirs = files(subprojects.sourceSets.main.allSource.srcDirs)
    sourceDirectories = files(subprojects.sourceSets.main.allSource.srcDirs)
    classDirectories = files(subprojects.sourceSets.main.output)
    executionData = files(subprojects.jacocoTestReport.executionData)
    reports {
        html.enabled = true
        xml.enabled = true
        csv.enabled = false
        xml.destination = file("${buildDir}/reports/jacoco/test/jacocoTestReport.xml")
    }
    onlyIf = {
        true
    }
    doFirst {
        executionData = files(executionData.findAll {
            it.exists()
        })
    }
}

coveralls {
    sourceDirs = files(subprojects.sourceSets.main.allSource.srcDirs).files.absolutePath
    jacocoReportPath = "build/reports/jacoco/test/jacocoTestReport.xml"
}

tasks.coveralls {
    dependsOn jacocoRootReport
}

wrapper {
    gradleVersion "4.2.1"
}

build.dependsOn project.getSubprojects().collect({ it.getTasks().getByName("build") })