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I had same issue. when DB update is running if process canceled by user this issue appear.
To solve issue at first delete db and then update db.
$-> grype db delete
$-> grype db update
Grype DIRECTORY
results in "failed to load vulnerability db: unable to get namespaces from store: database disk image is malformed"
grype version
grype version
Application: grype
Version: 0.57.1
Syft Version: v0.72.0
BuildDate: 2023-02-16T20:09:55Z
GitCommit: 50a5c33
GitDescription: v0.57.1
Platform: linux/amd64
GoVersion: go1.19.5
Compiler: gc
Supported DB Schema: 5
cat /etc/os-release
PRETTY_NAME="SparkyLinux 6.6 (Po-Tolo)"
NAME="SparkyLinux"
VERSION_ID="6.6"
VERSION="6.6 (Po-Tolo)"
ID=sparky
ID_LIKE=debian
HOME_URL="https://sparkylinux.org/"
SUPPORT_URL="https://sparkylinux.org/forum/"
BUG_REPORT_URL="https://sourceforge.net/p/sparkylinux/tickets"
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