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[Bug]: Iceberg Write failing to upgrade due to "IllegalArgumentException: unable to serialize SchemaCoder" #32795

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chamikaramj opened this issue Oct 16, 2024 · 12 comments
Open
2 of 17 tasks

[Bug]: Iceberg Write failing to upgrade due to "IllegalArgumentException: unable to serialize SchemaCoder" #32795

chamikaramj opened this issue Oct 16, 2024 · 12 comments
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@ahmedabu98
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bug io java P1

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@chamikaramj
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What happened?

I'm getting following (via the ExpansionService) when upgrading the Iceberg Write transform.

2024/10/16 02:58:02 E1016 02:58:02.041566      11 managed_transforms_worker_main.cc:138] Failed to upgrade using the expansion service manager: INTERNAL: Expansion request failed: java.lang.IllegalArgumentException: unable to serialize SchemaCoder<Schema: Fields:
2024/10/16 02:58:02 Field{name=tableIdentifierString, description=, type=STRING NOT NULL, options={{}}}
2024/10/16 02:58:02 Field{name=serializableDataFile, description=, type=ROW<path STRING NOT NULL, fileFormat STRING NOT NULL, recordCount INT64 NOT NULL, fileSizeInBytes INT64 NOT NULL, partitionPath STRING NOT NULL, partitionSpecId INT32 NOT NULL, keyMetadata BYTES, splitOffsets ARRAY<INT64 NOT NULL>, columnSizes MAP<INT32 NOT NULL, INT64 NOT NULL>, valueCounts MAP<INT32 NOT NULL, INT64 NOT NULL>, nullValueCounts MAP<INT32 NOT NULL, INT64 NOT NULL>, nanValueCounts MAP<INT32 NOT NULL, INT64 NOT NULL>, lowerBounds MAP<INT32 NOT NULL, BYTES NOT NULL>, upperBounds MAP<INT32 NOT NULL, BYTES NOT NULL>> NOT NULL, options={{}}}
2024/10/16 02:58:02 Encoding positions:
2024/10/16 02:58:02 {tableIdentifierString=0, serializableDataFile=1}
2024/10/16 02:58:02 Options:{{}}UUID: 1373ba11-1080-4271-b79a-985f2ff03727  UUID: 1373ba11-1080-4271-b79a-985f2ff03727 delegateCoder: org.apache.beam.sdk.coders.Coder$ByteBuddy$X4azj9mR@4a19cae6
2024/10/16 02:58:02     at org.apache.beam.sdk.util.SerializableUtils.serializeToByteArray(SerializableUtils.java:59)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.CoderTranslation.toCustomCoder(CoderTranslation.java:158)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.CoderTranslation.toProto(CoderTranslation.java:118)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.SdkComponents.registerCoder(SdkComponents.java:284)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.PCollectionTranslation.toProto(PCollectionTranslation.java:35)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.SdkComponents.registerPCollection(SdkComponents.java:239)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.PTransformTranslation.translateAppliedPTransform(PTransformTranslation.java:610)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.ParDoTranslation$ParDoTranslator.translate(ParDoTranslation.java:184)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.PTransformTranslation.toProto(PTransformTranslation.java:277)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.SdkComponents.registerPTransform(SdkComponents.java:183)
2024/10/16 02:58:02     at org.apache.beam.sdk.util.construction.PipelineTranslation$1.visitPrimitiveTransform(PipelineTranslation.java:96)
2024/10/16 02:58:02     at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:593)
2024/10/16 02:58:02     at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)

Seems like the coder for FileWriteResult is failing during translation. I'm not sure why the SchemaCoder didn't properly resolve for SerializableDataFile (so it ended up defaulting to SerializableCoder).

Issue Priority

Priority: 1 (data loss / total loss of function)

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@ahmedabu98 ahmedabu98 mentioned this issue Oct 16, 2024
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@ahmedabu98
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Can you check if this works? #32796

@chamikaramj
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Getting the same error with that PR.

@ahmedabu98 ahmedabu98 added this to the 2.60.0 Release milestone Oct 16, 2024
@ahmedabu98
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ahmedabu98 commented Oct 16, 2024 •
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I'm seeing that Iceberg unit and integration tests started failing ~10 hours ago.

@chamikaramj can you try it with the 2.60.0 release branch? I suspect something got merged recently and only HEAD is affected but we should check if this is affecting the release too.

@ahmedabu98
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I think #32757 may be the culprit PR. The tests are passing when reverting this change: #32802

@ahmedabu98 ahmedabu98 mentioned this issue Oct 16, 2024
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@ahmedabu98
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CC @reuvenlax

@ahmedabu98
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full stacktrace:

at org.apache.beam.sdk.util.SerializableUtils.serializeToByteArray(SerializableUtils.java:59)
        at org.apache.beam.sdk.util.construction.CoderTranslation.toCustomCoder(CoderTranslation.java:158)
        at org.apache.beam.sdk.util.construction.CoderTranslation.toProto(CoderTranslation.java:118)
        at org.apache.beam.sdk.util.construction.SdkComponents.registerCoder(SdkComponents.java:284)
        at org.apache.beam.sdk.util.construction.PCollectionTranslation.toProto(PCollectionTranslation.java:35)
        at org.apache.beam.sdk.util.construction.SdkComponents.registerPCollection(SdkComponents.java:239)
        at org.apache.beam.sdk.util.construction.PTransformTranslation.translateAppliedPTransform(PTransformTranslation.java:610)
        at org.apache.beam.sdk.util.construction.ParDoTranslation$ParDoTranslator.translate(ParDoTranslation.java:184)
        at org.apache.beam.sdk.util.construction.PTransformTranslation.toProto(PTransformTranslation.java:277)
        at org.apache.beam.sdk.util.construction.SdkComponents.registerPTransform(SdkComponents.java:183)
        at org.apache.beam.sdk.util.construction.PipelineTranslation$1.visitPrimitiveTransform(PipelineTranslation.java:96)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:593)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.visit(TransformHierarchy.java:585)
        at org.apache.beam.sdk.runners.TransformHierarchy$Node.access$500(TransformHierarchy.java:240)
        at org.apache.beam.sdk.runners.TransformHierarchy.visit(TransformHierarchy.java:214)
        at org.apache.beam.sdk.Pipeline.traverseTopologically(Pipeline.java:477)
        at org.apache.beam.sdk.util.construction.PipelineTranslation.toProto(PipelineTranslation.java:68)
        at org.apache.beam.sdk.util.construction.PipelineTranslation.toProto(PipelineTranslation.java:59)
        at org.apache.beam.runners.dataflow.DataflowRunner.run(DataflowRunner.java:1213)
        at org.apache.beam.runners.dataflow.DataflowRunner.run(DataflowRunner.java:203)
        at org.apache.beam.sdk.Pipeline.run(Pipeline.java:325)
        at org.apache.beam.sdk.Pipeline.run(Pipeline.java:310)
        at org.apache.beam.examples.multilanguage.Temp.runJob(Temp.java:442)
        at org.apache.beam.examples.multilanguage.Temp.main(Temp.java:289)
Caused by: java.io.NotSerializableException: org.apache.beam.sdk.schemas.utils.ByteBuddyUtils$TransformingMap
        at java.base/java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1200)
        at java.base/java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1585)
        at java.base/java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1542)
        at java.base/java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1451)
        at java.base/java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1194)
        at java.base/java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1585)
        at java.base/java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1542)
        at java.base/java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1451)
        at java.base/java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1194)
        at java.base/java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1585)
        at java.base/java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1542)
        at java.base/java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1451)
        at java.base/java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1194)
        at java.base/java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1585)
        at java.base/java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1542)
        at java.base/java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1451)
        at java.base/java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1194)
        at java.base/java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:358)
        at org.apache.beam.sdk.util.SerializableUtils.serializeToByteArray(SerializableUtils.java:55)
        ... 30 more

@Abacn
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Abacn commented Oct 16, 2024

#32757 isn't in 2.60.0, should the milestone item be 2.61.0?

@reuvenlax
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I'm taking a look.

@ahmedabu98
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@Abacn yes sorry, removing now

@ahmedabu98 ahmedabu98 removed this from the 2.60.0 Release milestone Oct 16, 2024
@reuvenlax
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I'm trying to repro - when I run these tests I see the following failure:

unable to serialize org.apache.beam.sdk.io.iceberg.ScanSource@490d9c41

However ScanSource is a BoundedSource, not an element. Does this have anything to do with schemas?

@reuvenlax
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@chamikaramj can you see if this works? #32810

@chamikaramj
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Yeah, #32810 works. Thank you!

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[Managed Iceberg] Explicitly set SchemaCoder for FileWriteResult ahmedabu98/beam
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@Abacn @chamikaramj @reuvenlax @ahmedabu98