tests.yml

name: Tests and Linting

on:
  pull_request:
  push:
    branches: [master]

jobs:
  Linting:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2
      - name: Set PY variable
        run: echo "PY=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV
      - uses: actions/cache@v2
        with:
          path: ~/.cache/pre-commit
          key: pre-commit|${{ env.PY }}|${{ hashFiles('.pre-commit-config.yaml') }}
      - name: Install pre-commit
        run: |
          pip install pre-commit
          pre-commit install
      - name: Run pre-commit
        run: SKIP=no-commit-to-branch pre-commit run --all-files

  Pytest:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: true
      matrix:
        python-version: ["3.7", "3.8", "3.9"]
    steps:
      - uses: actions/checkout@v2
      - name: Cache downloaded resources
        uses: actions/cache@v3
        with:
          path: ~/.data/
          key: resources
      - name: Set up Java
        uses: actions/setup-java@v2
        with:
          distribution: "temurin" # See 'Supported distributions' for available options
          java-version: "8"
      - name: Set up Python
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
          architecture: x64
      - name: Install dependencies
        run: |
          pip install --upgrade pip
          pip install -e '.[dev,setup]'

      - name: Test with Pytest on Python ${{ matrix.python-version }}
        env:
          UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }}
        run: python -m pytest --cov edsnlp --cov-report xml --ignore tests/test_docs.py
        if: matrix.python-version != '3.9'

      - name: Test with Pytest on Python ${{ matrix.python-version }}
        env:
          UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }}
        run: python -m pytest --cov edsnlp --cov-report xml
        if: matrix.python-version == '3.9'

      - name: Upload coverage
        uses: codecov/codecov-action@v2
        if: matrix.python-version == '3.9'


  Documentation:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v2
    - uses: actions/setup-python@v2
      with:
        python-version: "3.9"
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install '.[docs]'
    - name: Build documentation
      run: |
        mkdocs build --clean

  Installation:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.7", "3.8", "3.9"]
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install library
        run: |
          pip install .