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Specialized sampler callback for LFP calculations. #1385

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halfflat opened this issue Feb 16, 2021 · 1 comment
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Specialized sampler callback for LFP calculations. #1385

halfflat opened this issue Feb 16, 2021 · 1 comment
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co-sim Related to co-simulation work / SGA3 T5.5 enhancement interface Anything user-facing, including public C++ and Python APIs. python

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@halfflat
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In #1115 a number of options were floated for local field potential calculations. While Option 1 has been implemented using the generic sampling infrastructure available in the C++ and Python interfaces, @espenhgn has pointed out that the memory usage could become prohibitive in long simulations, and that the second option, viz. a specialized sampler callback for LFP calculations, would be more robust.

This would comprise a specialized callback that takes transmembrane current samples from one or more cells, initialized with a linear response matrix computed by the client code for summing the corresponding field contributions at electrode sites. The sampler would record the electrode contributions either in sum, or individually from each cell (for reproducibility), to some in-memory data store for global reduction and analysis at simulation end.

@halfflat halfflat added enhancement python co-sim Related to co-simulation work / SGA3 T5.5 interface Anything user-facing, including public C++ and Python APIs. labels Feb 16, 2021
@thorstenhater
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Subsumed by #1857

@thorstenhater thorstenhater closed this as not planned Won't fix, can't repro, duplicate, stale Nov 24, 2023
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co-sim Related to co-simulation work / SGA3 T5.5 enhancement interface Anything user-facing, including public C++ and Python APIs. python
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